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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7459078   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ppo-r.4   7459078   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ppo-m.4   7459078   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ppo-u.5   18109218   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 gma-u.5   100819668   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 gma-u.5   100783386   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 mtr-u.5   25482643   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ath-u.5   AT5G13770   Pentatricopeptide repeat (PPR-like) superfamily protein 
 vvi-u.5   100261964   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 vvi-u.5   100256233   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 sly-u.5   101254893   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 osa-u.5   9271390   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 zma-u.5   100274460   uncharacterized LOC100274460 

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Top 50 coexpressed genes to 7459078 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7459078 (ppo-u.5 coexpression data)

CoexMap"7459078"


ppoLOC7459078 | Entrez gene ID : 7459078    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024465303.1 [sequence] [blastp]
XP_024465304.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo_mito 4,  nucl 3,  chlo 2  (predict for XP_024465303.1)
chlo 4,  extr 4,  nucl 1,  cyto 1,  vacu 1,  cyto_nucl 1  (predict for XP_024465304.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_024465303.1)
other 8,  mito 3  (predict for XP_024465304.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7459078

.
ppo-r.4
for
7459078

.
ppo-m.4
for
7459078

.
ppo-u.5
for
18109218

.
gma-u.5
for
100819668

.
gma-u.5
for
100783386

.
mtr-u.5
for
25482643

.
ath-u.5
for
AT5G13770

.
vvi-u.5
for
100261964

.
vvi-u.5
for
100256233

.
sly-u.5
for
101254893

.
osa-u.5
for
9271390

.
zma-u.5
for
100274460

.


Ortholog ID: 9657
Species ath gma gma sly osa zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna sbi sot cit cit bdi nta
Symbol AT5G13770 LOC100783386 LOC100819668 LOC101254893 LOC9271390 LOC100274460 LOC103850898 LOC100261964 LOC100256233 LOC7459078 LOC18109218 LOC25482643 LOC123054094 LOC123046221 LOC123430614 LOC121206158 LOC107889310 LOC106384430 LOC110436337 LOC107062002 LOC102631325 LOC102614221 LOC100840486 LOC107786939
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic uncharacterized LOC100274460 pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like pentatricopeptide repeat-containing protein At5g13770, chloroplastic uncharacterized LOC107786939
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00760 Nicotinate and nicotinamide metabolism 2
gma00195 Photosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 4
sly00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 6
ppo00195 Photosynthesis 5
ppo00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 4
sot00196 Photosynthesis - antenna proteins 3
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831222 100783386 100819668 101254893 9271390 100274460 103850898 100261964 100256233 7459078 18109218 25482643 123054094 123046221 123430614 121206158 107889310 106384430 110436337 107062002 102631325 102614221 100840486 107786939
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