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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121219403   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 ath-u.5   AT3G25210   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100799614   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 gma-u.5   102660808   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 vvi-u.5   100264218   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 ppo-u.5   7471174   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 mtr-u.5   11440827   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 sly-u.5   101254308   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 osa-u.5   9268329   pentatricopeptide repeat-containing protein At3g25210, mitochondrial 
 zma-u.5   100382549   uncharacterized LOC100382549 

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Top 50 coexpressed genes to 121219403 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121219403 (ghi-r.1 coexpression data)

CoexMap"121219403"


ghiLOC121219403 | Entrez gene ID : 121219403    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040953436.1 [sequence] [blastp]
XP_040953437.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto_mito 1,  mito 1  (predict for XP_040953436.1)
chlo 8,  cyto_mito 1,  mito 1  (predict for XP_040953437.1)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for XP_040953436.1)
chlo 4,  mito 3  (predict for XP_040953437.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121219403
ath-u.5
for
AT3G25210
gma-u.5
for
100799614
gma-u.5
for
102660808
vvi-u.5
for
100264218
ppo-u.5
for
7471174
mtr-u.5
for
11440827
sly-u.5
for
101254308
osa-u.5
for
9268329
zma-u.5
for
100382549


Ortholog ID: 10794
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae sbi bdi
Symbol LOC107953987 LOC121219403 AT3G25210 LOC103828565 LOC106375701 LOC106404130 LOC102614361 LOC100799614 LOC102660808 LOC100264218 LOC7471174 LOC11440827 LOC101254308 LOC102591141 LOC107759243 LOC107762408 LOC9268329 LOC100382549 LOC123168026 LOC123150222 LOC8065421 LOC100825391
Function* pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial-like pentatricopeptide repeat-containing protein At3g25210, mitochondrial-like pentatricopeptide repeat-containing protein At3g25210, mitochondrial uncharacterized LOC100382549 pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial pentatricopeptide repeat-containing protein At3g25210, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 5
osa00906 Carotenoid biosynthesis 2
osa00900 Terpenoid backbone biosynthesis 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107953987 121219403 822114 103828565 106375701 106404130 102614361 100799614 102660808 100264218 7471174 11440827 101254308 102591141 107759243 107762408 9268329 100382549 123168026 123150222 8065421 100825391
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