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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121229271   tRNA ligase 1 
 ath-u.5   RNL   RNAligase 
 gma-u.5   100815563   tRNA ligase 1 
 vvi-u.5   100258617   tRNA ligase 1 
 ppo-u.5   18106204   tRNA ligase 1 
 mtr-u.5   25492457   tRNA ligase 1 
 sly-u.5   101247886   tRNA ligase 1 
 osa-u.5   4342624   tRNA ligase 1 
 zma-u.5   103632082   tRNA ligase 1 

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Top 50 coexpressed genes to 121229271 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121229271 (ghi-r.1 coexpression data)

CoexMap"121229271"


ghiLOC121229271 | Entrez gene ID : 121229271    
Species ghi ath gma vvi ppo mtr sly osa zma tae hvu bdi cit bra cre sbi bna nta sot
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (25 genes)  IEA  
GO CC
GO MF
GO:0003972 [list] [network] RNA ligase (ATP) activity  (6 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040969017.1 [sequence] [blastp]
XP_040969018.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto_mito 1  (predict for XP_040969017.1)
cyto 4,  chlo 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_040969018.1)
Subcellular
localization
TargetP
mito 7,  chlo 3  (predict for XP_040969017.1)
other 6,  scret 5  (predict for XP_040969018.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121229271

.
ath-u.5
for
RNL

.
gma-u.5
for
100815563

.
vvi-u.5
for
100258617

.
ppo-u.5
for
18106204

.
mtr-u.5
for
25492457

.
sly-u.5
for
101247886

.
osa-u.5
for
4342624

.
zma-u.5
for
103632082

.


Ortholog ID: 4458
Species ath gma sly osa zma bra bra vvi ppo mtr tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol RNL LOC100815563 LOC101247886 LOC4342624 LOC103632082 LOC103871536 LOC103843428 LOC100258617 LOC18106204 LOC25492457 LOC123187714 LOC123404926 LOC123425006 LOC107952917 LOC107922622 LOC106415140 LOC106346374 CHLRE_07g352800v5 LOC8063662 LOC102604569 LOC102621146 LOC100846175 LOC100845723 LOC107811332 LOC107790870
Function* RNAligase tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1-like tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 uncharacterized protein tRNA ligase 1 uncharacterized LOC102604569 tRNA ligase 1-like tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 4
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi00240 Pyrimidine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837306 100815563 101247886 4342624 103632082 103871536 103843428 100258617 18106204 25492457 123187714 123404926 123425006 107952917 107922622 106415140 106346374 5718201 8063662 102604569 102621146 100846175 100845723 107811332 107790870
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