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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123062330   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 tae-r.2   123079466   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 tae-r.2   123079404   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 tae-r.2   123079403   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 hvu-r.1   123402972   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 hvu-r.1   123444591   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 hvu-r.1   123444594   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 
 bdi-r.1   100823565   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 bdi-r.1   100822634   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 osa-u.5   4327045   small ribosomal subunit protein mS78 (rPPR3a) 
 zma-u.5   103636586   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 sbi-r.1   8085258   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 sbi-r.1   8054724   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 

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Top 50 coexpressed genes to 123062330 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123062330 (tae-r.2 coexpression data)

CoexMap"123062330"


taeLOC123062330 | Entrez gene ID : 123062330    
Species tae hvu bdi osa zma sbi gma bra sot cre ghi ppo sly cit ath nta mtr bna vvi
Paralog 4 3 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031930 [list] [network] mitochondria-nucleus signaling pathway  (40 genes)  IEA  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (43 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1890 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044341725.1 [sequence] [blastp]
XP_044341726.1 [sequence] [blastp]
XP_044341727.1 [sequence] [blastp]
XP_044341728.1 [sequence] [blastp]
XP_044341729.1 [sequence] [blastp]
XP_044341730.1 [sequence] [blastp]
XP_044341731.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341725.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341726.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341727.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341728.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341729.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341730.1)
chlo 7,  mito 2,  cyto_mito 2  (predict for XP_044341731.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044341725.1)
chlo 9  (predict for XP_044341726.1)
chlo 9  (predict for XP_044341727.1)
chlo 9  (predict for XP_044341728.1)
chlo 9  (predict for XP_044341729.1)
chlo 9  (predict for XP_044341730.1)
chlo 9  (predict for XP_044341731.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123062330
tae-r.2
for
123079466
tae-r.2
for
123079404
tae-r.2
for
123079403
hvu-r.1
for
123402972
hvu-r.1
for
123444591
hvu-r.1
for
123444594
bdi-r.1
for
100823565
bdi-r.1
for
100822634
osa-u.5
for
4327045
zma-u.5
for
103636586
sbi-r.1
for
8085258
sbi-r.1
for
8054724


Ortholog ID: 12511
Species tae tae tae hvu hvu hvu bdi bdi osa zma sbi sbi
Symbol LOC123079466 LOC123062273 LOC123062272 LOC123402972 LOC123444591 LOC123444594 LOC100823565 LOC100822634 LOC4327045 LOC103636586 LOC8085258 LOC8054724
Function* pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial small ribosomal subunit protein mS78 (rPPR3a) pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00230 Purine metabolism 2
osa03010 Ribosome 2
osa00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123079466 123062273 123062272 123402972 123444591 123444594 100823565 100822634 4327045 103636586 8085258 8054724
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