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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100824336   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 osa-u.5   4334814   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ath-u.5   OTP70   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   112997711   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 sly-u.5   101243676   pentatricopeptide repeat-containing protein 
 bra-r.6   103863081   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 vvi-u.5   100241682   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ppo-u.5   7476750   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 mtr-u.5   25489190   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ghi-r.1   107946850   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 ghi-r.1   107933481   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ghi-r.1   107900108   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 sot-r.1   107061653   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 cit-r.1   112499593   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 nta-r.1   107817039   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 nta-r.1   107803788   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 

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Top 50 coexpressed genes to 100824336 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100824336 (bdi-r.1 coexpression data)

CoexMap"123087540"


taeLOC123087540 | Entrez gene ID : 123087540    
Species bdi osa ath gma sly bra vvi ppo mtr ghi sot cit nta zma cre sbi tae bna hvu
Paralog 1 1 1 1 1 1 1 1 1 3 1 1 2 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (1066 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044365509.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_044365509.1)
Subcellular
localization
TargetP
mito 7,  chlo 3  (predict for XP_044365509.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100824336
osa-u.5
for
4334814
ath-u.5
for
OTP70
gma-u.5
for
112997711
sly-u.5
for
101243676
bra-r.6
for
103863081
vvi-u.5
for
100241682
ppo-u.5
for
7476750
mtr-u.5
for
25489190
ghi-r.1
for
107946850
ghi-r.1
for
107933481
ghi-r.1
for
107900108
sot-r.1
for
107061653
cit-r.1
for
112499593
nta-r.1
for
107817039
nta-r.1
for
107803788


Ortholog ID: 9609
Species bdi osa ath gma sly bra vvi ppo mtr ghi ghi ghi sot cit nta nta
Symbol LOC100824336 LOC4334814 OTP70 LOC112997711 LOC101243676 LOC103863081 LOC100241682 LOC7476750 LOC25489190 LOC107946850 LOC107933481 LOC107900108 LOC107061653 LOC112499593 LOC107817039 LOC107803788
Function* pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100824336 4334814 828630 112997711 101243676 103863081 100241682 7476750 25489190 107946850 107933481 107900108 107061653 112499593 107817039 107803788
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