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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123090547   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4347878   polyadenylation and cleavage factor homolog 4 
 zma-u.5   103632446   ENTH/VHS family protein 
 zma-u.5   103647268   ENTH/VHS family protein 
 sbi-r.1   8061689   uncharacterized LOC8061689 
 ath-u.5   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 gma-u.5   100807857   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100788958   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100811629   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101244024   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101246003   polyadenylation and cleavage factor homolog 4 
 bra-r.6   103867279   polyadenylation and cleavage factor homolog 4 
 bra-r.6   103865551   polyadenylation and cleavage factor homolog 4 
 vvi-u.5   100251089   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   18100065   uncharacterized LOC18100065 
 mtr-u.5   11435271   uncharacterized LOC11435271 
 mtr-u.5   25483891   uncharacterized LOC25483891 
 ghi-r.1   121216117   polyadenylation and cleavage factor homolog 4 
 ghi-r.1   121216179   uncharacterized LOC121216179 
 ghi-r.1   107947737   polyadenylation and cleavage factor homolog 4 
 bna-r.1   125585640   polyadenylation and cleavage factor homolog 4-like 
 bna-r.1   125609295   polyadenylation and cleavage factor homolog 4-like 
 bna-r.1   106451108   polyadenylation and cleavage factor homolog 4 
 sot-r.1   102597998   uncharacterized LOC102597998 
 sot-r.1   102593629   polyadenylation and cleavage factor homolog 4 
 cit-r.1   102610910   polyadenylation and cleavage factor homolog 4 
 nta-r.1   107817412   polyadenylation and cleavage factor homolog 4 
 nta-r.1   107795733   polyadenylation and cleavage factor homolog 4 

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Top 50 coexpressed genes to 123090547 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123090547 (tae-r.2 coexpression data)

CoexMap"123090547"


taeLOC123090547 | Entrez gene ID : 123090547    
Species tae osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta hvu cre bdi
Paralog 1 1 2 1 1 3 2 2 1 1 2 3 3 2 1 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03015 [list] [network] mRNA surveillance pathway (388 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (8 genes)  IEA  
GO:0031124 [list] [network] mRNA 3'-end processing  (56 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (43 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (71 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
Protein XP_044367796.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4  (predict for XP_044367796.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for XP_044367796.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123090547
osa-u.5
for
4347878
zma-u.5
for
103632446
zma-u.5
for
103647268
sbi-r.1
for
8061689
ath-u.5
for
AT2G36480
gma-u.5
for
100807857
gma-u.5
for
100788958
gma-u.5
for
100811629
sly-u.5
for
101244024
sly-u.5
for
101246003
bra-r.6
for
103867279
bra-r.6
for
103865551
vvi-u.5
for
100251089
ppo-u.5
for
18100065
mtr-u.5
for
11435271
mtr-u.5
for
25483891
ghi-r.1
for
121216117
ghi-r.1
for
121216179
ghi-r.1
for
107947737
bna-r.1
for
125585640
bna-r.1
for
125609295
bna-r.1
for
106451108
sot-r.1
for
102597998
sot-r.1
for
102593629
cit-r.1
for
102610910
nta-r.1
for
107817412
nta-r.1
for
107795733


Ortholog ID: 6236
Species tae osa zma zma sbi ath gma gma gma sly sly bra bra vvi ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta
Symbol LOC123090547 LOC4347878 LOC103632446 LOC103647268 LOC8061689 AT2G36480 LOC100807857 LOC100811629 LOC102662278 LOC101244024 LOC101246003 LOC103867279 LOC103865551 LOC100251089 LOC18100065 LOC11435271 LOC25483891 LOC121216117 LOC107922273 LOC107921940 LOC125609295 LOC106451108 LOC106396068 LOC102597998 LOC102593629 LOC102610910 LOC107817412 LOC107795733
Function* polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 ENTH/VHS family protein ENTH/VHS family protein uncharacterized LOC8061689 pre-mRNA cleavage complex 2 Pcf11-like protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC18100065 uncharacterized LOC11435271 uncharacterized LOC25483891 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC102597998 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123090547 4347878 103632446 103647268 8061689 818222 100807857 100811629 102662278 101244024 101246003 103867279 103865551 100251089 18100065 11435271 25483891 121216117 107922273 107921940 125609295 106451108 106396068 102597998 102593629 102610910 107817412 107795733
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