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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100788958   polyadenylation and cleavage factor homolog 4 
 gma-r.7   100788958   polyadenylation and cleavage factor homolog 4 
 gma-m.5   100788958   polyadenylation and cleavage factor homolog 4 
 gma-u.5   102662278   polyadenylation and cleavage factor homolog 4-like 
 gma-u.5   100807857   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100811629   polyadenylation and cleavage factor homolog 4 
 mtr-u.5   11435271   uncharacterized LOC11435271 
 mtr-u.5   25483891   uncharacterized LOC25483891 
 ppo-u.5   18100065   uncharacterized LOC18100065 
 ath-u.5   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 vvi-u.5   100251089   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101246003   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101244024   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4347878   polyadenylation and cleavage factor homolog 4 
 zma-u.5   103647268   ENTH/VHS family protein 
 zma-u.5   103632446   ENTH/VHS family protein 

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Top 50 coexpressed genes to 100788958 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100788958 (gma-u.5 coexpression data)

CoexMap"100788958"


gmaLOC100788958 | Entrez gene ID : 100788958      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (11 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (28 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (35 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
Protein XP_006577057.1 [sequence] [blastp]
XP_006577058.1 [sequence] [blastp]
XP_006577059.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_006577057.1)
nucl 9,  cyto_nucl 5  (predict for XP_006577058.1)
nucl 10  (predict for XP_006577059.1)
Subcellular
localization
TargetP
mito 4,  chlo 3,  other 3  (predict for XP_006577057.1)
mito 4,  chlo 3,  other 3  (predict for XP_006577058.1)
other 3  (predict for XP_006577059.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100788958

.
gma-r.7
for
100788958

.
gma-m.5
for
100788958

.
gma-u.5
for
102662278

.
gma-u.5
for
100807857

.
gma-u.5
for
100811629

.
mtr-u.5
for
11435271

.
mtr-u.5
for
25483891

.
ppo-u.5
for
18100065

.
ath-u.5
for
AT2G36480

.
vvi-u.5
for
100251089

.
sly-u.5
for
101246003

.
sly-u.5
for
101244024

.
osa-u.5
for
4347878

.
zma-u.5
for
103647268

.
zma-u.5
for
103632446

.


Ortholog ID: 6236
Species ath gma gma sly sly osa zma zma bra bra vvi ppo mtr mtr tae ghi ghi bna bna sbi sot sot cit nta nta
Symbol AT2G36480 LOC100811629 LOC102662278 LOC101246003 LOC101244024 LOC4347878 LOC103647268 LOC103632446 LOC103867279 LOC103865551 LOC100251089 LOC18100065 LOC11435271 LOC25483891 LOC123090547 LOC107921940 LOC107922273 LOC125609295 LOC106451108 LOC8061689 LOC102593629 LOC102597998 LOC102610910 LOC107795733 LOC107817412
Function* pre-mRNA cleavage complex 2 Pcf11-like protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 ENTH/VHS family protein ENTH/VHS family protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC18100065 uncharacterized LOC11435271 uncharacterized LOC25483891 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 uncharacterized LOC8061689 polyadenylation and cleavage factor homolog 4 uncharacterized LOC102597998 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818222 100811629 102662278 101246003 101244024 4347878 103647268 103632446 103867279 103865551 100251089 18100065 11435271 25483891 123090547 107921940 107922273 125609295 106451108 8061689 102593629 102597998 102610910 107795733 107817412
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