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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123092575   THO complex subunit 4A 
 osa-u.5   4345621   THO complex subunit 4D 
 osa-u.5   4349526   THO complex subunit 4A 
 osa-u.5   4351236   THO complex subunit 4A 
 zma-u.5   100279524   THO complex subunit 4 
 zma-u.5   100280157   THO complex subunit 4C 
 zma-u.5   100280336   THO complex subunit 4 
 ath-u.5   AT5G02530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   ALY4   ALWAYS EARLY 4 
 ath-u.5   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100801491   THO complex subunit 4D 
 gma-u.5   100820344   THO complex subunit 4D 
 gma-u.5   100817317   THO complex subunit 4A 
 sly-u.5   101256343   THO complex subunit 4D 
 sly-u.5   101262878   THO complex subunit 4A 
 sly-u.5   101266904   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100257081   THO complex subunit 4A 
 vvi-u.5   100257009   THO complex subunit 4D 
 vvi-u.5   100258168   THO complex subunit 4B 
 ppo-u.5   7493558   THO complex subunit 4D 
 ppo-u.5   7489584   THO complex subunit 4A 
 ppo-u.5   7485720   THO complex subunit 4A 
 mtr-u.5   11406653   THO complex subunit 4D 
 mtr-u.5   11446087   THO complex subunit 4B 
 mtr-u.5   25492480   THO complex subunit 4A 

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Top 50 coexpressed genes to 123092575 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123092575 (tae-r.2 coexpression data)

CoexMap"123092575"


taeLOC123092575 | Entrez gene ID : 123092575    
Species tae osa zma ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot bna ghi
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03013 [list] [network] Nucleocytoplasmic transport (365 genes)
taes03015 [list] [network] mRNA surveillance pathway (388 genes)
taes03040 [list] [network] Spliceosome (1516 genes)
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (84 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
Protein XP_044370310.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_044370310.1)
Subcellular
localization
TargetP
chlo 6,  other 6  (predict for XP_044370310.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123092575

.
osa-u.5
for
4345621

.
osa-u.5
for
4349526

.
osa-u.5
for
4351236

.
zma-u.5
for
100279524

.
zma-u.5
for
100280157

.
zma-u.5
for
100280336

.
ath-u.5
for
AT5G02530

.
ath-u.5
for
ALY4

.
ath-u.5
for
AT5G59950

.
gma-u.5
for
100801491

.
gma-u.5
for
100820344

.
gma-u.5
for
100817317

.
sly-u.5
for
101256343

.
sly-u.5
for
101262878

.
sly-u.5
for
101266904

.
vvi-u.5
for
100257081

.
vvi-u.5
for
100257009

.
vvi-u.5
for
100258168

.
ppo-u.5
for
7493558

.
ppo-u.5
for
7489584

.
ppo-u.5
for
7485720

.
mtr-u.5
for
11406653

.
mtr-u.5
for
11446087

.
mtr-u.5
for
25492480

.


Ortholog ID: 634
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G59950 AT5G02530 LOC100783362 LOC100785926 LOC101262878 LOC101268859 LOC4351236 LOC4342793 LOC100280336 LOC100278324 LOC103847441 LOC100257081 LOC100258168 LOC18106636 LOC7485720 LOC25492480 LOC11406653 LOC123156239 LOC123091728 LOC123424545 LOC123448119 LOC107937033 LOC107932446 LOC106412038 LOC106389530 CHLRE_10g462250v5 LOC8069134 LOC8061518 LOC102583179 LOC102591640 LOC102611313 LOC102630056 LOC100841511 LOC100843825 LOC107784716 LOC107805467
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein THO complex subunit 4A THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D-like THO complex subunit 4A THO complex subunit 4A THO complex subunit 4 uncharacterized LOC100278324 THO complex subunit 4B THO complex subunit 4A THO complex subunit 4B THO complex subunit 4D THO complex subunit 4A THO complex subunit 4A THO complex subunit 4D THO complex subunit 4D THO complex subunit 4B THO complex subunit 4D-like THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4A THO complex subunit 4C-like THO complex subunit 4B uncharacterized protein THO complex subunit 4B THO complex subunit 4D THO complex subunit 4D THO complex subunit 4A-like THO complex subunit 4B-like THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4B THO complex subunit 4D THO complex subunit 4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 6
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03015 mRNA surveillance pathway 7
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03013 Nucleocytoplasmic transport 2
sly03083 Polycomb repressive complex 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 4
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae04141 Protein processing in endoplasmic reticulum 8
tae04144 Endocytosis 8
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 10
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 12
ghi03013 Nucleocytoplasmic transport 10
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna04626 Plant-pathogen interaction 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna00190 Oxidative phosphorylation 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03083 Polycomb repressive complex 2
sbi03015 mRNA surveillance pathway 2
sbi03050 Proteasome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04144 Endocytosis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 3
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836117 831923 100783362 100785926 101262878 101268859 4351236 4342793 100280336 100278324 103847441 100257081 100258168 18106636 7485720 25492480 11406653 123156239 123091728 123424545 123448119 107937033 107932446 106412038 106389530 5723978 8069134 8061518 102583179 102591640 102611313 102630056 100841511 100843825 107784716 107805467
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