ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123112293	rhamnogalacturonan I rhamnosyltransferase 1
tae-r.2	123121816	rhamnogalacturonan I rhamnosyltransferase 1
hvu-r.1	123409656	rhamnogalacturonan I rhamnosyltransferase 1-like
hvu-r.1	123399105	rhamnogalacturonan I rhamnosyltransferase 1-like
bdi-r.1	100837431	O-fucosyltransferase 34
bdi-r.1	100827276	O-fucosyltransferase 34
bdi-r.1	100828174	O-fucosyltransferase 34
osa-u.5	9269670	rhamnogalacturonan I rhamnosyltransferase 1
osa-u.5	4330591	rhamnogalacturonan I rhamnosyltransferase 1
osa-u.5	4340767	rhamnogalacturonan I rhamnosyltransferase 1
zma-u.5	100384451	uncharacterized LOC100384451
zma-u.5	100304383	O-fucosyltransferase family protein
zma-u.5	103639891	uncharacterized LOC103639891
sbi-r.1	8083278	uncharacterized protein At1g04910
sbi-r.1	8077707	uncharacterized protein At1g04910
sbi-r.1	8076398	uncharacterized protein At1g04910
ath-u.5	AT3G02250	O-fucosyltransferase family protein
ath-u.5	AT5G15740	O-fucosyltransferase family protein
gma-u.5	100814267	rhamnogalacturonan I rhamnosyltransferase 1
gma-u.5	100776860	rhamnogalacturonan I rhamnosyltransferase 1
sly-u.5	101263008	rhamnogalacturonan I rhamnosyltransferase 1-like
sly-u.5	101265902	rhamnogalacturonan I rhamnosyltransferase 1-like
sly-u.5	101263915	rhamnogalacturonan I rhamnosyltransferase 1
bra-r.6	103856159	rhamnogalacturonan I rhamnosyltransferase 1
bra-r.6	103858950	rhamnogalacturonan I rhamnosyltransferase 1
bra-r.6	103846391	rhamnogalacturonan I rhamnosyltransferase 1
vvi-u.5	100251581	rhamnogalacturonan I rhamnosyltransferase 1
vvi-u.5	100247578	rhamnogalacturonan I rhamnosyltransferase 1
ppo-u.5	18107361	rhamnogalacturonan I rhamnosyltransferase 1-like
ppo-u.5	7453863	rhamnogalacturonan I rhamnosyltransferase 1
ppo-u.5	7484721	rhamnogalacturonan I rhamnosyltransferase 1
mtr-u.5	25495439	rhamnogalacturonan I rhamnosyltransferase 1
mtr-u.5	11411703	rhamnogalacturonan I rhamnosyltransferase 1
mtr-u.5	25493921	rhamnogalacturonan I rhamnosyltransferase 1
ghi-r.1	107887075	rhamnogalacturonan I rhamnosyltransferase 1
ghi-r.1	107912100	rhamnogalacturonan I rhamnosyltransferase 1
ghi-r.1	107926649	rhamnogalacturonan I rhamnosyltransferase 1
bna-r.1	125606960	rhamnogalacturonan I rhamnosyltransferase 1
bna-r.1	125580825	rhamnogalacturonan I rhamnosyltransferase 1-like
bna-r.1	106349205	rhamnogalacturonan I rhamnosyltransferase 1-like
sot-r.1	102580268	uncharacterized protein At1g04910-like
sot-r.1	102601962	uncharacterized protein At1g04910-like
sot-r.1	102580225	uncharacterized protein At1g04910-like
cit-r.1	102629411	hypothetical protein
cit-r.1	102618438	rhamnogalacturonan I rhamnosyltransferase 1-like
nta-r.1	107783896	rhamnogalacturonan I rhamnosyltransferase 1-like
nta-r.1	107788289	rhamnogalacturonan I rhamnosyltransferase 1-like
nta-r.1	107815526	rhamnogalacturonan I rhamnosyltransferase 1-like

Top 50 coexpressed genes to 123112293 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123112293 (tae-r.2 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

rhamnogalacturonan I rhamnosyltransferase 1

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(13575 genes)

IEA

GO MF

Protein

XP_044389180.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 2, cyto 1, vacu 1, E.R. 1, golg 1, E.R._vacu 1, cyto_E.R. 1

(predict for XP_044389180.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_044389180.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123112293	tae-r.2 for 123121816	hvu-r.1 for 123409656	hvu-r.1 for 123399105	bdi-r.1 for 100837431	bdi-r.1 for 100827276	bdi-r.1 for 100828174	osa-u.5 for 9269670	osa-u.5 for 4330591	osa-u.5 for 4340767	zma-u.5 for 100384451	zma-u.5 for 100304383	zma-u.5 for 103639891	sbi-r.1 for 8083278	sbi-r.1 for 8077707	sbi-r.1 for 8076398	ath-u.5 for AT3G02250	ath-u.5 for AT5G15740	gma-u.5 for 100814267	gma-u.5 for 100776860	sly-u.5 for 101263008	sly-u.5 for 101265902	sly-u.5 for 101263915	bra-r.6 for 103856159	bra-r.6 for 103858950	bra-r.6 for 103846391	vvi-u.5 for 100251581	vvi-u.5 for 100247578	ppo-u.5 for 18107361	ppo-u.5 for 7453863	ppo-u.5 for 7484721	mtr-u.5 for 25495439	mtr-u.5 for 11411703	mtr-u.5 for 25493921	ghi-r.1 for 107887075	ghi-r.1 for 107912100	ghi-r.1 for 107926649	bna-r.1 for 125606960	bna-r.1 for 125580825	bna-r.1 for 106349205	sot-r.1 for 102580268	sot-r.1 for 102601962	sot-r.1 for 102580225	cit-r.1 for 102629411	cit-r.1 for 102618438	nta-r.1 for 107783896	nta-r.1 for 107788289	nta-r.1 for 107815526

Please wait a moment.

Ortholog

Ortholog ID: 1314

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

rhamnogalacturonan I rhamnosyltransferase 1

rhamnogalacturonan I rhamnosyltransferase 1-like

O-fucosyltransferase 34

rhamnogalacturonan I rhamnosyltransferase 1

uncharacterized LOC100384451

uncharacterized LOC103639891

O-fucosyltransferase family protein

uncharacterized protein At1g04910

O-fucosyltransferase family protein

rhamnogalacturonan I rhamnosyltransferase 1

rhamnogalacturonan I rhamnosyltransferase 1-like

rhamnogalacturonan I rhamnosyltransferase 1

rhamnogalacturonan I rhamnosyltransferase 1-like

rhamnogalacturonan I rhamnosyltransferase 1

uncharacterized protein At1g04910-like

hypothetical protein

rhamnogalacturonan I rhamnosyltransferase 1-like

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00541	Biosynthesis of various nucleotide sugars	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00410	beta-Alanine metabolism	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00460	Cyanoamino acid metabolism	2
vvi00966	Glucosinolate biosynthesis	2
vvi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	6
mtr00941	Flavonoid biosynthesis	3
mtr00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2
mtr00053	Ascorbate and aldarate metabolism	2
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr00541	Biosynthesis of various nucleotide sugars	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi00562	Inositol phosphate metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	4
nta04142	Lysosome	2
nta00053	Ascorbate and aldarate metabolism	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

123104069

123150166

123409656

123399105

100837431

100827276

100828174

9269670

4330591

4340767

100384451

103639891

103627678

8083278

8077707

8076398

821223

831430

100778901

100788099

101263008

101265902

101263915

103856159

103858950

103872094

100251581

100247578

7453863

7484721

18097672

25495439

11411703

25493921

107912100

107926649

107952822

125580825

106382870

106438924

102580268

102601962

102580225

102629411

102618438

107788289

107815526

107795261

The preparation time of this page was 0.3 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	3	3	3	3	2	2	3	3	2	3	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123112293 (tae-r.2 coexpression data)

Top 50 enrichment test to 123112293 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**