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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123123327   squalene synthase 1 
 tae-r.2   123105516   squalene synthase 1 
 tae-r.2   123113831   squalene synthase 1 
 hvu-r.1   123452848   squalene synthase 1-like 
 bdi-r.1   100831520   squalene synthase 
 bdi-r.1   100825967   squalene synthase 
 osa-u.5   4342663   squalene synthase 8 
 osa-u.5   4334492   squalene synthase 
 zma-u.5   100191601   uncharacterized LOC100191601 
 zma-u.5   541614   squalene synthase 1 
 sbi-r.1   8061131   squalene synthase 
 ath-u.5   SQS1   squalene synthase 1 
 ath-u.5   SQS2   squalene synthase 2 
 gma-u.5   547940   squalene synthase 
 gma-u.5   100775983   squalene synthase 2 
 sly-u.5   SQS1   squalene synthase 
 sly-u.5   SQS4   squalene synthase-like 
 bra-r.6   103836099   squalene synthase 1 
 bra-r.6   103834400   squalene synthase 1 
 bra-r.6   103836007   inactive squalene synthase 2 
 vvi-u.5   100265798   squalene synthase 2 
 ppo-u.5   7494303   squalene synthase 2 
 ppo-u.5   7461247   squalene synthase 1 
 mtr-u.5   11441556   squalene synthase 2 
 ghi-r.1   107928014   squalene synthase 2 
 ghi-r.1   107908820   squalene synthase-like 
 ghi-r.1   107937000   squalene synthase 2 
 bna-r.1   125598170   squalene synthase 1-like 
 bna-r.1   111214348   squalene synthase 1 
 bna-r.1   111212693   inactive squalene synthase 2 
 sot-r.1   102582345   squalene synthase-like 
 cit-r.1   102577972   squalene synthase 2 
 nta-r.1   107813695   squalene synthase-like 
 nta-r.1   107792297   squalene synthase 
 nta-r.1   107791556   squalene synthase 
 cre-r.1   CHLRE_03g175250v5   uncharacterized protein 

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Top 50 coexpressed genes to 123123327 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123123327 (tae-r.2 coexpression data)

CoexMap"123123327"


taeLOC123123327 | Entrez gene ID : 123123327    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 2 2 2 1 2 2 2 3 1 2 1 3 3 1 1 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00100 [list] [network] Steroid biosynthesis (156 genes)
taes00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (33 genes)
GO BP
GO:0045338 [list] [network] farnesyl diphosphate metabolic process  (24 genes)  IEA  
GO:0008610 [list] [network] lipid biosynthetic process  (1457 genes)  IEA  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (661 genes)  IEA  
GO MF
GO:0051996 [list] [network] squalene synthase [NAD(P)H] activity  (15 genes)  IEA  
Protein XP_044399750.1 [sequence] [blastp]
XP_044399751.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_044399750.1)
cyto_nucl 4,  nucl 3,  cyto 3,  chlo 1,  E.R. 1,  pero 1,  golg 1,  chlo_mito 1  (predict for XP_044399751.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_044399750.1)
mito 5  (predict for XP_044399751.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123123327
tae-r.2
for
123105516
tae-r.2
for
123113831
hvu-r.1
for
123452848
bdi-r.1
for
100831520
bdi-r.1
for
100825967
osa-u.5
for
4342663
osa-u.5
for
4334492
zma-u.5
for
100191601
zma-u.5
for
541614
sbi-r.1
for
8061131
ath-u.5
for
SQS1
ath-u.5
for
SQS2
gma-u.5
for
547940
gma-u.5
for
100775983
sly-u.5
for
SQS1
sly-u.5
for
SQS4
bra-r.6
for
103836099
bra-r.6
for
103834400
bra-r.6
for
103836007
vvi-u.5
for
100265798
ppo-u.5
for
7494303
ppo-u.5
for
7461247
mtr-u.5
for
11441556
ghi-r.1
for
107928014
ghi-r.1
for
107908820
ghi-r.1
for
107937000
bna-r.1
for
125598170
bna-r.1
for
111214348
bna-r.1
for
111212693
sot-r.1
for
102582345
cit-r.1
for
102577972
nta-r.1
for
107813695
nta-r.1
for
107792297
nta-r.1
for
107791556
cre-r.1
for
CHLRE_03g175250v5


Ortholog ID: 3254
Species tae tae tae hvu bdi bdi osa osa zma zma sbi ath ath gma gma sly sly bra bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot cit nta nta nta cre
Symbol LOC123123327 LOC123105516 LOC123113831 LOC123452848 LOC100831520 LOC100825967 LOC4342663 LOC4334492 LOC100191601 LOC541614 LOC8061131 SQS1 SQS2 LOC547940 LOC100775983 SQS1 SQS4 LOC103834400 LOC103836007 LOC103862364 LOC100265798 LOC7494303 LOC7461247 LOC11441556 LOC107928014 LOC107908820 LOC107928928 LOC111214348 LOC106428793 LOC106353454 LOC102582345 LOC102577972 LOC107813695 LOC107790933 LOC107759374 CHLRE_03g175250v5
Function* squalene synthase 1 squalene synthase 1 squalene synthase 1 squalene synthase 1-like squalene synthase squalene synthase squalene synthase 8 squalene synthase uncharacterized LOC100191601 squalene synthase 1 squalene synthase squalene synthase 1 squalene synthase 2 squalene synthase squalene synthase 2 squalene synthase squalene synthase-like squalene synthase 1 inactive squalene synthase 2 squalene synthase 1 squalene synthase 2 squalene synthase 2 squalene synthase 1 squalene synthase 2 squalene synthase 2 squalene synthase-like squalene synthase 2 squalene synthase 1 squalene synthase 1-like inactive squalene synthase 2 squalene synthase-like squalene synthase 2 squalene synthase-like squalene synthase squalene synthase-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 5
tae04626 Plant-pathogen interaction 3
tae04136 Autophagy - other 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00900 Terpenoid backbone biosynthesis 3
zma04142 Lysosome 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
zma00280 Valine, leucine and isoleucine degradation 2
zma00650 Butanoate metabolism 2
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi04145 Phagosome 5
sbi04142 Lysosome 4
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 6
ath00100 Steroid biosynthesis 4
ath00020 Citrate cycle (TCA cycle) 3
ath00280 Valine, leucine and isoleucine degradation 2
ath00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00460 Cyanoamino acid metabolism 2
ath00500 Starch and sucrose metabolism 2
ath00999 Biosynthesis of various plant secondary metabolites 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00999 Biosynthesis of various plant secondary metabolites 3
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 5
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 8
sly00280 Valine, leucine and isoleucine degradation 2
sly00650 Butanoate metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 9
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 5
bra04148 Efferocytosis 4
bra04144 Endocytosis 3
bra04141 Protein processing in endoplasmic reticulum 3
bra00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00100 Steroid biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
ppo03030 DNA replication 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 7
ppo04145 Phagosome 4
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 3
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 7
bna04144 Endocytosis 3
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 7
bna04144 Endocytosis 3
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 4
bna01040 Biosynthesis of unsaturated fatty acids 4
bna01212 Fatty acid metabolism 4
bna04141 Protein processing in endoplasmic reticulum 3
bna00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 3
sot00900 Terpenoid backbone biosynthesis 3
sot00100 Steroid biosynthesis 2
sot00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta04141 Protein processing in endoplasmic reticulum 2
nta04142 Lysosome 2
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123123327 123105516 123113831 123452848 100831520 100825967 4342663 4334492 100191601 541614 8061131 829616 829617 547940 100775983 100316899 101252241 103834400 103836007 103862364 100265798 7494303 7461247 11441556 107928014 107908820 107928928 111214348 106428793 106353454 102582345 102577972 107813695 107790933 107759374 5728868
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