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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SQS2   squalene synthase 2 
 ath-r.7   SQS2   squalene synthase 2 
 ath-m.9   SQS2   squalene synthase 2 
 ath-e.2   SQS2   squalene synthase 2 
 ath-m.4.bio   SQS2   squalene synthase 2 
 ath-m.4.hor   SQS2   squalene synthase 2 
 ath-m.4.lig   SQS2   squalene synthase 2 
 ath-m.4.str   SQS2   squalene synthase 2 
 ath-m.4.tis   SQS2   squalene synthase 2 
 ath-u.5   SQS1   squalene synthase 1 
 bra-r.6   103836007   inactive squalene synthase 2 
 bra-r.6   103862364   squalene synthase 1 
 bra-r.6   103836099   squalene synthase 1 
 bna-r.1   111214348   squalene synthase 1 
 bna-r.1   111212693   inactive squalene synthase 2 
 bna-r.1   111212694   squalene synthase 1-like 
 ghi-r.1   107908820   squalene synthase-like 
 ghi-r.1   107928014   squalene synthase 2 
 ghi-r.1   107937000   squalene synthase 2 
 cit-r.1   102577972   squalene synthase 2 
 gma-u.5   547940   squalene synthase 
 gma-u.5   100775983   squalene synthase 2 
 vvi-u.5   100265798   squalene synthase 2 
 ppo-u.5   7461247   squalene synthase 1 
 ppo-u.5   7494303   squalene synthase 2 
 mtr-u.5   11441556   squalene synthase 2 
 sly-u.5   SQS1   squalene synthase 
 sly-u.5   SQS4   squalene synthase-like 
 sot-r.1   102582345   squalene synthase-like 
 sot-r.1   102581159   squalene synthase 
 nta-r.1   107759374   squalene synthase-like 
 nta-r.1   107760995   squalene synthase-like 
 nta-r.1   107799710   squalene synthase-like 
 osa-u.5   4334492   squalene synthase 
 osa-u.5   4342663   squalene synthase 8 
 zma-u.5   541614   squalene synthase 1 
 zma-u.5   100191601   uncharacterized LOC100191601 
 tae-r.2   123123327   squalene synthase 1 
 tae-r.2   123105516   squalene synthase 1 
 tae-r.2   123113831   squalene synthase 1 
 hvu-r.1   123452848   squalene synthase 1-like 
 sbi-r.1   8061131   squalene synthase 
 bdi-r.1   100831520   squalene synthase 
 bdi-r.1   100825967   squalene synthase 
 cre-r.1   CHLRE_03g175250v5   uncharacterized protein 

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Top 50 coexpressed genes to SQS2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SQS2 (ath-u.5 coexpression data)

CoexMap"829617"


athSQS2 | Entrez gene ID : 829617      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 1 2 2 3 2 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00100 [list] [network] Steroid biosynthesis (36 genes)
ath00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (23 genes)
GO BP
GO:0016126 [list] [network] sterol biosynthetic process  (23 genes)  ISS  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (120 genes)  ISS  
GO MF
GO:0051996 [list] [network] squalene synthase [NAD(P)H] activity  (2 genes)  IDA IGI ISS  
Protein NP_001328690.1 [sequence] [blastp]
NP_195191.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  plas 1,  vacu 1,  pero 1  (predict for NP_001328690.1)
cyto 4,  chlo 3,  vacu 1,  chlo_mito 1  (predict for NP_195191.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001328690.1)
other 7  (predict for NP_195191.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SQS2
ath-r.7
for
SQS2
ath-m.9
for
SQS2
ath-e.2
for
SQS2
ath-m.4.bio
for
SQS2
ath-m.4.hor
for
SQS2
ath-m.4.lig
for
SQS2
ath-m.4.str
for
SQS2
ath-m.4.tis
for
SQS2
ath-u.5
for
SQS1
bra-r.6
for
103836007
bra-r.6
for
103862364
bra-r.6
for
103836099
bna-r.1
for
111214348
bna-r.1
for
111212693
bna-r.1
for
111212694
ghi-r.1
for
107908820
ghi-r.1
for
107928014
ghi-r.1
for
107937000
cit-r.1
for
102577972
gma-u.5
for
547940
gma-u.5
for
100775983
vvi-u.5
for
100265798
ppo-u.5
for
7461247
ppo-u.5
for
7494303
mtr-u.5
for
11441556
sly-u.5
for
SQS1
sly-u.5
for
SQS4
sot-r.1
for
102582345
sot-r.1
for
102581159
nta-r.1
for
107759374
nta-r.1
for
107760995
nta-r.1
for
107799710
osa-u.5
for
4334492
osa-u.5
for
4342663
zma-u.5
for
541614
zma-u.5
for
100191601
tae-r.2
for
123123327
tae-r.2
for
123105516
tae-r.2
for
123113831
hvu-r.1
for
123452848
sbi-r.1
for
8061131
bdi-r.1
for
100831520
bdi-r.1
for
100825967
cre-r.1
for
CHLRE_03g175250v5


Ortholog ID: 3254
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol SQS2 SQS1 LOC103836007 LOC103862364 LOC103834400 LOC111214348 LOC106428793 LOC106353454 LOC107908820 LOC107928014 LOC107928928 LOC102577972 LOC547940 LOC100775983 LOC100265798 LOC7461247 LOC7494303 LOC11441556 SQS1 SQS4 LOC102582345 LOC107759374 LOC107790933 LOC107813695 LOC4334492 LOC4342663 LOC541614 LOC100191601 LOC123123327 LOC123105516 LOC123113831 LOC123452848 LOC8061131 LOC100831520 LOC100825967 CHLRE_03g175250v5
Function* squalene synthase 2 squalene synthase 1 inactive squalene synthase 2 squalene synthase 1 squalene synthase 1 squalene synthase 1 squalene synthase 1-like inactive squalene synthase 2 squalene synthase-like squalene synthase 2 squalene synthase 2 squalene synthase 2 squalene synthase squalene synthase 2 squalene synthase 2 squalene synthase 1 squalene synthase 2 squalene synthase 2 squalene synthase squalene synthase-like squalene synthase-like squalene synthase-like squalene synthase squalene synthase-like squalene synthase squalene synthase 8 squalene synthase 1 uncharacterized LOC100191601 squalene synthase 1 squalene synthase 1 squalene synthase 1 squalene synthase 1-like squalene synthase squalene synthase squalene synthase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00460 Cyanoamino acid metabolism 2
ath00500 Starch and sucrose metabolism 2
ath00999 Biosynthesis of various plant secondary metabolites 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 6
ath00100 Steroid biosynthesis 4
ath00020 Citrate cycle (TCA cycle) 3
ath00280 Valine, leucine and isoleucine degradation 2
ath00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 5
bra04148 Efferocytosis 4
bra04144 Endocytosis 3
bra04141 Protein processing in endoplasmic reticulum 3
bra00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 9
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 7
bna04144 Endocytosis 3
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 7
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 7
bna04144 Endocytosis 3
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 4
bna01040 Biosynthesis of unsaturated fatty acids 4
bna01212 Fatty acid metabolism 4
bna04141 Protein processing in endoplasmic reticulum 3
bna00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00999 Biosynthesis of various plant secondary metabolites 3
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 5
gma00100 Steroid biosynthesis 3
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 7
ppo04145 Phagosome 4
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00100 Steroid biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
ppo03030 DNA replication 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 3
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 8
sly00280 Valine, leucine and isoleucine degradation 2
sly00650 Butanoate metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 3
sot00900 Terpenoid backbone biosynthesis 3
sot00100 Steroid biosynthesis 2
sot00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta04141 Protein processing in endoplasmic reticulum 2
nta04142 Lysosome 2
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 4
nta00071 Fatty acid degradation 4
nta01212 Fatty acid metabolism 4
nta04146 Peroxisome 4
nta00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
zma00280 Valine, leucine and isoleucine degradation 2
zma00650 Butanoate metabolism 2
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 3
zma00900 Terpenoid backbone biosynthesis 3
zma04142 Lysosome 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 5
tae04626 Plant-pathogen interaction 3
tae04136 Autophagy - other 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi04145 Phagosome 5
sbi04142 Lysosome 4
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829617 829616 103836007 103862364 103834400 111214348 106428793 106353454 107908820 107928014 107928928 102577972 547940 100775983 100265798 7461247 7494303 11441556 100316899 101252241 102582345 107759374 107790933 107813695 4334492 4342663 541614 100191601 123123327 123105516 123113831 123452848 8061131 100831520 100825967 5728868
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