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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123165987   protein WHI3 
 tae-r.2   123158298   U2 small nuclear ribonucleoprotein B'' 
 tae-r.2   123148888   protein WHI3 
 hvu-r.1   123410026   U2 small nuclear ribonucleoprotein B'' 
 bdi-r.1   100834562   U2 small nuclear ribonucleoprotein B'' 
 osa-u.5   4341891   RNA-binding protein L-like 
 zma-u.5   100193418   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sbi-r.1   8063776   U2 small nuclear ribonucleoprotein B'' 
 ath-u.5   AT2G42240   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100799471   U1 small nuclear ribonucleoprotein A 
 gma-u.5   100780983   uncharacterized LOC100780983 
 sly-u.5   101267756   U1 small nuclear ribonucleoprotein A 
 vvi-u.5   100247532   RNA-binding protein L 
 ppo-u.5   7462598   RNA-binding protein L 
 mtr-u.5   11410894   U1 small nuclear ribonucleoprotein A 
 ghi-r.1   107913223   RNA-binding protein L 
 ghi-r.1   107913371   RNA-binding protein L 
 sot-r.1   102581347   U2 small nuclear ribonucleoprotein B'' 
 cit-r.1   102623625   uncharacterized LOC102623625 
 nta-r.1   107781079   uncharacterized LOC107781079 
 nta-r.1   107797132   uncharacterized LOC107797132 

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Top 50 coexpressed genes to 123165987 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123165987 (tae-r.2 coexpression data)

CoexMap"123165987"


taeLOC123165987 | Entrez gene ID : 123165987    
Species tae hvu bdi osa zma sbi ath gma sly vvi ppo mtr ghi sot cit nta bra cre bna
Paralog 3 1 1 1 1 1 1 2 1 1 1 1 2 1 1 2 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044439684.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1  (predict for XP_044439684.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_044439684.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123165987
tae-r.2
for
123158298
tae-r.2
for
123148888
hvu-r.1
for
123410026
bdi-r.1
for
100834562
osa-u.5
for
4341891
zma-u.5
for
100193418
sbi-r.1
for
8063776
ath-u.5
for
AT2G42240
gma-u.5
for
100799471
gma-u.5
for
100780983
sly-u.5
for
101267756
vvi-u.5
for
100247532
ppo-u.5
for
7462598
mtr-u.5
for
11410894
ghi-r.1
for
107913223
ghi-r.1
for
107913371
sot-r.1
for
102581347
cit-r.1
for
102623625
nta-r.1
for
107781079
nta-r.1
for
107797132


Ortholog ID: 11667
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly vvi ppo mtr ghi ghi sot cit nta nta
Symbol LOC123165987 LOC123158298 LOC123148888 LOC123410026 LOC100834562 LOC4341891 LOC100193418 LOC8063776 AT2G42240 LOC100799471 LOC100780983 LOC101267756 LOC100247532 LOC7462598 LOC11410894 LOC107913223 LOC107913371 LOC102581347 LOC102623625 LOC107781079 LOC107797132
Function* protein WHI3 U2 small nuclear ribonucleoprotein B'' protein WHI3 U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' RNA-binding protein L-like RNA-binding (RRM/RBD/RNP motifs) family protein U2 small nuclear ribonucleoprotein B'' RNA-binding (RRM/RBD/RNP motifs) family protein U1 small nuclear ribonucleoprotein A uncharacterized LOC100780983 U1 small nuclear ribonucleoprotein A RNA-binding protein L RNA-binding protein L U1 small nuclear ribonucleoprotein A RNA-binding protein L RNA-binding protein L U2 small nuclear ribonucleoprotein B'' uncharacterized LOC102623625 uncharacterized LOC107781079 uncharacterized LOC107797132
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00790 Folate biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr04712 Circadian rhythm - plant 2
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 2
ghi00561 Glycerolipid metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 2
ghi00561 Glycerolipid metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00230 Purine metabolism 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123165987 123158298 123148888 123410026 100834562 4341891 100193418 8063776 818824 100799471 100780983 101267756 100247532 7462598 11410894 107913223 107913371 102581347 102623625 107781079 107797132
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