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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123182767   probable starch synthase 4, chloroplastic/amyloplastic 
 osa-u.5   4324654   probable starch synthase 4, chloroplastic/amyloplastic 
 osa-u.5   4339426   probable starch synthase 4, chloroplastic/amyloplastic 
 zma-u.5   100170236   starch synthase IV 
 ath-u.5   SS4   starch synthase 4 
 gma-u.5   100804775   probable starch synthase 4, chloroplastic/amyloplastic 
 gma-u.5   100788308   probable starch synthase 4, chloroplastic/amyloplastic 
 sly-u.5   100191117   starch synthase VI 
 sly-u.5   100316881   starch synthase IV 
 vvi-u.5   100257130   probable starch synthase 4, chloroplastic/amyloplastic 
 vvi-u.5   100233071   starch synthase VI 
 ppo-u.5   18107883   uncharacterized LOC18107883 
 ppo-u.5   7487835   probable starch synthase 4, chloroplastic/amyloplastic 
 mtr-u.5   25493390   probable starch synthase 4, chloroplastic/amyloplastic 

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Top 50 coexpressed genes to 123182767 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123182767 (tae-r.2 coexpression data)

CoexMap"123182767"


taeLOC123182767 | Entrez gene ID : 123182767    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 2 1 1 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00500 [list] [network] Starch and sucrose metabolism (558 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (27 genes)  IEA  
Protein XP_044451359.1 [sequence] [blastp]
XP_044451360.1 [sequence] [blastp]
XP_044451361.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3  (predict for XP_044451359.1)
cyto 6,  chlo 1,  nucl 1  (predict for XP_044451360.1)
cyto 8,  nucl 1  (predict for XP_044451361.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044451359.1)
other 8  (predict for XP_044451360.1)
other 8  (predict for XP_044451361.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123182767
osa-u.5
for
4324654
osa-u.5
for
4339426
zma-u.5
for
100170236
ath-u.5
for
SS4
gma-u.5
for
100804775
gma-u.5
for
100788308
sly-u.5
for
100191117
sly-u.5
for
100316881
vvi-u.5
for
100257130
vvi-u.5
for
100233071
ppo-u.5
for
18107883
ppo-u.5
for
7487835
mtr-u.5
for
25493390


Ortholog ID: 6039
Species tae tae hvu bdi osa osa zma sbi ath gma gma sly sly bra vvi vvi ppo ppo mtr ghi ghi bna bna sot cit cit nta nta cre cre
Symbol LOC123141968 LOC543061 LOC123448543 LOC100836636 LOC4324654 LOC4339426 LOC100170236 LOC8068976 SS4 LOC100788308 LOC100804775 LOC100191117 LOC100316881 LOC103834053 LOC100257130 LOC100233071 LOC7487835 LOC18107883 LOC25493390 LOC107913770 LOC121218677 LOC106360862 LOC106430626 LOC102579881 LOC102626137 LOC102627834 LOC107766543 LOC107807888 CHLRE_16g665800v5 CHLRE_16g663850v5
Function* probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic starch synthase IV probable starch synthase 4, chloroplastic/amyloplastic starch synthase 4 probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic starch synthase VI starch synthase IV probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic starch synthase VI probable starch synthase 4, chloroplastic/amyloplastic uncharacterized LOC18107883 probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic glycogen synthase-like probable starch synthase 4, chloroplastic/amyloplastic uncharacterized LOC102627834 uncharacterized LOC107766543 putative starch synthase 4, chloroplastic/amyloplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi01200 Carbon metabolism 3
bdi00260 Glycine, serine and threonine metabolism 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00330 Arginine and proline metabolism 2
osa01230 Biosynthesis of amino acids 2
osa00190 Oxidative phosphorylation 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 7
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma00500 Starch and sucrose metabolism 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
bra00500 Starch and sucrose metabolism 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 4
ghi03018 RNA degradation 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 3
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 3
bna00500 Starch and sucrose metabolism 2
bna00561 Glycerolipid metabolism 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00561 Glycerolipid metabolism 2
sot00053 Ascorbate and aldarate metabolism 2
sot00562 Inositol phosphate metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00010 Glycolysis / Gluconeogenesis 2
cre00030 Pentose phosphate pathway 2
cre00051 Fructose and mannose metabolism 2
cre00710 Carbon fixation by Calvin cycle 2
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123141968 543061 123448543 100836636 4324654 4339426 100170236 8068976 827550 100788308 100804775 100191117 100316881 103834053 100257130 100233071 7487835 18107883 25493390 107913770 121218677 106360862 106430626 102579881 102626137 102627834 107766543 107807888 5727013 5727030
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