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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123186983   replication protein A 70 kDa DNA-binding subunit C 
 osa-u.5   4337594   replication protein A 70 kDa DNA-binding subunit C-like 
 osa-u.5   4330902   replication protein A 70 kDa DNA-binding subunit A-like 
 zma-u.5   100383373   Replication protein A 70 kDa DNA-binding subunit A 
 zma-u.5   100285427   uncharacterized LOC100285427 
 ath-u.5   RPA1A   replication protein A 1A 
 ath-u.5   AT4G19130   Replication factor-A protein 1-like protein 
 ath-u.5   RPA70C   Replication factor-A protein 1-like protein 
 gma-u.5   100792409   replication protein A 70 kDa DNA-binding subunit A 
 gma-u.5   100778597   replication protein A 70 kDa DNA-binding subunit A 
 sly-u.5   101250913   replication protein A 70 kDa DNA-binding subunit A-like 
 sly-u.5   101259439   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100268119   replication protein A 70 kDa DNA-binding subunit A 
 vvi-u.5   100263039   replication protein A 70 kDa DNA-binding subunit A 
 ppo-u.5   7491902   replication protein A 70 kDa DNA-binding subunit E 
 ppo-u.5   18107702   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   25486480   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   11407150   replication protein A 70 kDa DNA-binding subunit A 
 mtr-u.5   112421905   replication protein A 70 kDa DNA-binding subunit E 

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Top 50 coexpressed genes to 123186983 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123186983 (tae-r.2 coexpression data)

CoexMap"123186983"


taeLOC123186983 | Entrez gene ID : 123186983    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 2 2 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03030 [list] [network] DNA replication (163 genes)
taes03420 [list] [network] Nucleotide excision repair (265 genes)
taes03430 [list] [network] Mismatch repair (123 genes)
taes03440 [list] [network] Homologous recombination (198 genes)
taes03460 [list] [network] Fanconi anemia pathway (141 genes)
GO BP
GO:0007004 [list] [network] telomere maintenance via telomerase  (18 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (126 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (222 genes)  IEA  
GO:0051321 [list] [network] meiotic cell cycle  (271 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (358 genes)  IEA  
GO CC
GO:0005662 [list] [network] DNA replication factor A complex  (29 genes)  IEA  
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (18 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (104 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (2838 genes)  IEA  
Protein XP_044454663.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 2,  E.R. 2  (predict for XP_044454663.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044454663.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123186983
osa-u.5
for
4337594
osa-u.5
for
4330902
zma-u.5
for
100383373
zma-u.5
for
100285427
ath-u.5
for
RPA1A
ath-u.5
for
AT4G19130
ath-u.5
for
RPA70C
gma-u.5
for
100792409
gma-u.5
for
100778597
sly-u.5
for
101250913
sly-u.5
for
101259439
vvi-u.5
for
100268119
vvi-u.5
for
100263039
ppo-u.5
for
7491902
ppo-u.5
for
18107702
mtr-u.5
for
25486480
mtr-u.5
for
11407150
mtr-u.5
for
112421905


Ortholog ID: 2122
Species tae tae hvu hvu bdi bdi osa osa zma zma sbi sbi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre
Symbol LOC123128602 LOC123186983 LOC123401853 LOC123424396 LOC100835357 LOC100846917 LOC4330902 LOC4337594 LOC100383373 LOC100285427 LOC8056064 LOC8081933 AT4G19130 RPA70C LOC100792409 LOC100778597 LOC101250913 LOC101259439 LOC103828494 LOC103861037 LOC100268119 LOC100263039 LOC18107702 LOC7491902 LOC112421905 LOC11407150 LOC107946806 LOC107947368 LOC106366739 LOC106381668 LOC102580048 LOC102585520 LOC102626079 LOC102611437 LOC107831305 LOC107764144 CHLRE_17g718850v5
Function* replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit C-like Replication protein A 70 kDa DNA-binding subunit A uncharacterized LOC100285427 replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A Replication factor-A protein 1-like protein Replication factor-A protein 1-like protein replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit E replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit C replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A replication protein A 70 kDa DNA-binding subunit A-like replication protein A 70 kDa DNA-binding subunit A-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 5
osa03030 DNA replication 2
osa03420 Nucleotide excision repair 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03460 Fanconi anemia pathway 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 6
ath03460 Fanconi anemia pathway 5
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 4
vvi03030 DNA replication 3
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03420 Nucleotide excision repair 3
sot03410 Base excision repair 2
sot03430 Mismatch repair 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123128602 123186983 123401853 123424396 100835357 100846917 4330902 4337594 100383373 100285427 8056064 8081933 827651 834576 100792409 100778597 101250913 101259439 103828494 103861037 100268119 100263039 18107702 7491902 112421905 11407150 107946806 107947368 106366739 106381668 102580048 102585520 102626079 102611437 107831305 107764144 5729312
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