ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123189475	probable RNA-dependent RNA polymerase 2
tae-r.2	123045701	probable RNA-dependent RNA polymerase 2
tae-r.2	123045704	probable RNA-dependent RNA polymerase 2
tae-r.2	123053573	probable RNA-dependent RNA polymerase 2
hvu-r.1	123426951	probable RNA-dependent RNA polymerase 2
bdi-r.1	100830376	probable RNA-dependent RNA polymerase 2
bdi-r.1	100821561	probable RNA-dependent RNA polymerase 2
osa-u.5	4336092	probable RNA-dependent RNA polymerase 2
zma-u.5	100502460	RNA-dependent DNA polymerase
sbi-r.1	8073554	probable RNA-dependent RNA polymerase 2
ath-u.5	RDR2	RNA-dependent RNA polymerase 2
gma-u.5	100808274	RNA-dependent RNA polymerase 2
gma-u.5	100789458	RNA-dependent RNA polymerase 2
sly-u.5	101250389	RNA-dependent RNA polymerase 2
bra-r.6	103833901	RNA-dependent RNA polymerase 2
vvi-u.5	100260325	RNA-dependent RNA polymerase 2
ppo-u.5	7457721	RNA-dependent RNA polymerase 2
mtr-u.5	11407970	RNA-dependent RNA polymerase 2
ghi-r.1	107939293	RNA-dependent RNA polymerase 2
ghi-r.1	107939800	RNA-dependent RNA polymerase 2
bna-r.1	106439671	RNA-dependent RNA polymerase 2
bna-r.1	106422376	RNA-dependent RNA polymerase 2
sot-r.1	102590975	RNA-dependent RNA polymerase 2
cit-r.1	102611197	RNA-dependent RNA polymerase 2
nta-r.1	107814202	RNA-dependent RNA polymerase 2
nta-r.1	107773126	RNA-dependent RNA polymerase 2

Annotation

functional annotation

KEGG

GO BP

GO:0030422 [list] [network] siRNA processing

(53 genes)

IEA

GO CC

GO:0031380 [list] [network] nuclear RNA-directed RNA polymerase complex

(22 genes)

IEA

GO MF

GO:0003968 [list] [network] RNA-directed RNA polymerase activity	(22 genes)	IEA
GO:0003723 [list] [network] RNA binding	(4004 genes)	IEA

Protein

XP_044457837.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 2, mito 1, cysk 1, cyto_mito 1, cyto_plas 1

(predict for XP_044457837.1)

Subcellular
localization
TargetP

other 6

(predict for XP_044457837.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123189475	tae-r.2 for 123045701	tae-r.2 for 123045704	tae-r.2 for 123053573	hvu-r.1 for 123426951	bdi-r.1 for 100830376	bdi-r.1 for 100821561	osa-u.5 for 4336092	zma-u.5 for 100502460	sbi-r.1 for 8073554	ath-u.5 for RDR2	gma-u.5 for 100808274	gma-u.5 for 100789458	sly-u.5 for 101250389	bra-r.6 for 103833901	vvi-u.5 for 100260325	ppo-u.5 for 7457721	mtr-u.5 for 11407970	ghi-r.1 for 107939293	ghi-r.1 for 107939800	bna-r.1 for 106439671	bna-r.1 for 106422376	sot-r.1 for 102590975	cit-r.1 for 102611197	nta-r.1 for 107814202	nta-r.1 for 107773126

Ortholog

Ortholog ID: 8075

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RDR2

Function^*

probable RNA-dependent RNA polymerase 2

RNA-dependent DNA polymerase

probable RNA-dependent RNA polymerase 2

RNA-dependent RNA polymerase 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03013	Nucleocytoplasmic transport	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	2
sot04146	Peroxisome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

123053573

123053576

123098132

123426951

100830376

100821561

4336092

100502460

8073554

826714

100808274

100789458

101250389

103833901

100260325

7457721

11407970

107939293

107939800

106439671

106422376

102590975

102611197

107814202

107773126

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123189475 (tae-r.2 coexpression data)

Top 50 enrichment test to 123189475 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	2	1	1	1	1	2	1	1	1	1	1	2	2	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123189475 (tae-r.2 coexpression data)

Top 50 enrichment test to 123189475 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**