ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123189904	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
tae-r.2	123062367	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
tae-r.2	123040853	BRCA1-associated RING domain protein 1
tae-r.2	123046135	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
hvu-r.1	123427227	BRCA1-associated RING domain protein 1
hvu-r.1	123416662	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bdi-r.1	100835205	BRCA1-associated RING domain protein 1
bdi-r.1	100842545	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bdi-r.1	100842826	BRCA1-associated RING domain protein 1
osa-u.5	107276010	BRCA1-associated RING domain protein 1
osa-u.5	4339293	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
osa-u.5	4336384	BRCA1-associated RING domain protein 1
zma-u.5	103630583	uncharacterized LOC103630583
zma-u.5	100281664	ATBRCA1
sbi-r.1	8077022	BRCA1-associated RING domain protein 1
sbi-r.1	8064471	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sbi-r.1	8067490	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
ath-u.5	BRCA1	breast cancer susceptibility1
ath-u.5	BARD1	breast cancer associated RING 1
gma-u.5	100306420	BRCA1 carboxy-terminal domain-containing protein
gma-u.5	100784883	BRCA1-associated RING domain protein 1
gma-u.5	100789372	BRCT domain-containing protein
sly-u.5	101249153	BRCA1-associated RING domain protein 1-like
sly-u.5	101256694	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bra-r.6	103873167	uncharacterized LOC103873167
bra-r.6	103858702	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
bra-r.6	103843674	BRCA1-associated RING domain protein 1
vvi-u.5	100253255	BRCA1-associated RING domain protein 1
ppo-u.5	7470812	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
ppo-u.5	7474513	BRCA1-associated RING domain protein 1
mtr-u.5	25486045	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
mtr-u.5	11444771	BRCA1-associated RING domain protein 1
ghi-r.1	107937661	BRCA1-associated RING domain protein 1
ghi-r.1	107937648	BRCA1-associated RING domain protein 1
ghi-r.1	107944716	uncharacterized LOC107944716
bna-r.1	106360996	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sot-r.1	102579131	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
sot-r.1	102589099	BRCA1-associated RING domain protein 1
sot-r.1	102585833	BRCA1-associated RING domain protein 1-like
cit-r.1	102622461	BRCA1-associated RING domain protein 1
cit-r.1	102626843	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
nta-r.1	107821036	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
nta-r.1	107822351	protein BREAST CANCER SUSCEPTIBILITY 1 homolog
nta-r.1	107773243	BRCA1-associated RING domain protein 1-like
cre-r.1	CHLRE_16g672350v5	uncharacterized protein
cre-r.1	CHLRE_01g018650v5	uncharacterized protein
cre-r.1	CHLRE_03g174600v5	uncharacterized protein

Top 50 coexpressed genes to 123189904 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123189904 (tae-r.2 coexpression data)

CoexMap"123189904"

[Cytoscape]

Annotation

functional annotation

KEGG

taes03440 [list] [network] Homologous recombination (198 genes)

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination	(222 genes)	IEA
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II	(367 genes)	IEA

GO CC

GO:0031436 [list] [network] BRCA1-BARD1 complex	(22 genes)	IEA
GO:0070531 [list] [network] BRCA1-A complex	(31 genes)	IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity

(1191 genes)

IEA

Protein

XP_044458355.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cysk 1, cyto 1, mito 1, plas 1, mito_plas 1, cyto_plas 1

(predict for XP_044458355.1)

Subcellular
localization
TargetP

other 6

(predict for XP_044458355.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123189904	tae-r.2 for 123062367	tae-r.2 for 123040853	tae-r.2 for 123046135	hvu-r.1 for 123427227	hvu-r.1 for 123416662	bdi-r.1 for 100835205	bdi-r.1 for 100842545	bdi-r.1 for 100842826	osa-u.5 for 107276010	osa-u.5 for 4339293	osa-u.5 for 4336384	zma-u.5 for 103630583	zma-u.5 for 100281664	sbi-r.1 for 8077022	sbi-r.1 for 8064471	sbi-r.1 for 8067490	ath-u.5 for BRCA1	ath-u.5 for BARD1	gma-u.5 for 100306420	gma-u.5 for 100784883	gma-u.5 for 100789372	sly-u.5 for 101249153	sly-u.5 for 101256694	bra-r.6 for 103873167	bra-r.6 for 103858702	bra-r.6 for 103843674	vvi-u.5 for 100253255	ppo-u.5 for 7470812	ppo-u.5 for 7474513	mtr-u.5 for 25486045	mtr-u.5 for 11444771	ghi-r.1 for 107937661	ghi-r.1 for 107937648	ghi-r.1 for 107944716	bna-r.1 for 106360996	sot-r.1 for 102579131	sot-r.1 for 102589099	sot-r.1 for 102585833	cit-r.1 for 102622461	cit-r.1 for 102626843	nta-r.1 for 107821036	nta-r.1 for 107822351	nta-r.1 for 107773243	cre-r.1 for CHLRE_16g672350v5	cre-r.1 for CHLRE_01g018650v5	cre-r.1 for CHLRE_03g174600v5

Ortholog

Ortholog ID: 1586

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

BRCA1

BARD1

Function^*