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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123401825   WD repeat-containing protein LWD1-like 
 hvu-r.1   123402235   protein TRANSPARENT TESTA GLABRA 1 
 tae-r.2   123128013   protein TRANSPARENT TESTA GLABRA 1 
 tae-r.2   123137790   protein TRANSPARENT TESTA GLABRA 1 
 tae-r.2   123145107   protein TRANSPARENT TESTA GLABRA 1 
 bdi-r.1   100838616   WD repeat-containing protein LWD1 
 bdi-r.1   100823168   protein TRANSPARENT TESTA GLABRA 1 
 osa-u.5   4330331   protein TRANSPARENT TESTA GLABRA 1 
 osa-u.5   4329512   WD repeat-containing protein LWD1 
 zma-u.5   100383192   WD40 repeat protein 
 zma-u.5   103627556   protein TRANSPARENT TESTA GLABRA 1 
 sbi-r.1   8076027   protein TRANSPARENT TESTA GLABRA 1 
 sbi-r.1   8059609   WD repeat-containing protein LWD1 
 sbi-r.1   110434868   WD repeat-containing protein LWD1-like 
 ath-u.5   LWD2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   TTG1   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   ATAN11   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100779365   WD repeat-containing protein LWD1 
 gma-u.5   100782785   protein TRANSPARENT TESTA GLABRA 1 
 gma-u.5   100804923   protein TRANSPARENT TESTA GLABRA 1 
 sly-u.5   101251160   protein TRANSPARENT TESTA GLABRA 1 
 sly-u.5   101260134   WD repeat-containing protein LWD1 
 sly-u.5   101262902   protein TRANSPARENT TESTA GLABRA 1 
 bra-r.6   103843095   WD repeat-containing protein LWD1 
 bra-r.6   103874320   protein TRANSPARENT TESTA GLABRA 1 
 vvi-u.5   WDR2   WD repeat 2 
 vvi-u.5   WDR1   WD-repeat 1 
 ppo-u.5   112326476   WD repeat-containing protein LWD1 
 ppo-u.5   7464471   protein TRANSPARENT TESTA GLABRA 1 
 ppo-u.5   7466288   WD repeat-containing protein LWD1 
 mtr-u.5   11437531   WD repeat-containing protein LWD1 
 mtr-u.5   11440452   protein TRANSPARENT TESTA GLABRA 1 
 ghi-r.1   107904228   protein TRANSPARENT TESTA GLABRA 1 
 ghi-r.1   121227136   protein TRANSPARENT TESTA GLABRA 1-like 
 ghi-r.1   107948000   protein TRANSPARENT TESTA GLABRA 1-like 
 bna-r.1   106401856   WD repeat-containing protein LWD1 
 bna-r.1   106348252   protein TRANSPARENT TESTA GLABRA 1 
 bna-r.1   106348480   protein TRANSPARENT TESTA GLABRA 1-like 
 sot-r.1   102589991   protein TRANSPARENT TESTA GLABRA 1-like 
 sot-r.1   102593569   protein TRANSPARENT TESTA GLABRA 1-like 
 cit-r.1   102615088   WD repeat-containing protein LWD1 
 cit-r.1   102607596   protein TRANSPARENT TESTA GLABRA 1 
 nta-r.1   107800718   protein TRANSPARENT TESTA GLABRA 1-like 
 nta-r.1   107824070   WD repeat-containing protein LWD1 
 nta-r.1   107803204   protein TRANSPARENT TESTA GLABRA 1-like 
 cre-r.1   CHLRE_16g674000v5   uncharacterized protein 

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Top 50 coexpressed genes to 123401825 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123401825 (hvu-r.1 coexpression data)

CoexMap"123401825"


hvuLOC123401825 | Entrez gene ID : 123401825    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 2 2 3 3 3 3 2 2 3 2 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03083 [list] [network] Polycomb repressive complex (95 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4692 genes)  IEA  
Protein XP_044951614.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 9  (predict for XP_044951614.1)
Subcellular
localization
TargetP
other 9  (predict for XP_044951614.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123401825
hvu-r.1
for
123402235
tae-r.2
for
123128013
tae-r.2
for
123137790
tae-r.2
for
123145107
bdi-r.1
for
100838616
bdi-r.1
for
100823168
osa-u.5
for
4330331
osa-u.5
for
4329512
zma-u.5
for
100383192
zma-u.5
for
103627556
sbi-r.1
for
8076027
sbi-r.1
for
8059609
sbi-r.1
for
110434868
ath-u.5
for
LWD2
ath-u.5
for
TTG1
ath-u.5
for
ATAN11
gma-u.5
for
100779365
gma-u.5
for
100782785
gma-u.5
for
100804923
sly-u.5
for
101251160
sly-u.5
for
101260134
sly-u.5
for
101262902
bra-r.6
for
103843095
bra-r.6
for
103874320
vvi-u.5
for
WDR2
vvi-u.5
for
WDR1
ppo-u.5
for
112326476
ppo-u.5
for
7464471
ppo-u.5
for
7466288
mtr-u.5
for
11437531
mtr-u.5
for
11440452
ghi-r.1
for
107904228
ghi-r.1
for
121227136
ghi-r.1
for
107948000
bna-r.1
for
106401856
bna-r.1
for
106348252
bna-r.1
for
106348480
sot-r.1
for
102589991
sot-r.1
for
102593569
cit-r.1
for
102615088
cit-r.1
for
102607596
nta-r.1
for
107800718
nta-r.1
for
107824070
nta-r.1
for
107803204
cre-r.1
for
CHLRE_16g674000v5


Ortholog ID: 2559
Species hvu hvu tae tae tae bdi bdi osa osa zma zma sbi sbi sbi ath ath ath gma gma gma sly sly sly bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC123401825 LOC123402235 LOC123145107 LOC123137081 LOC123127421 LOC100838616 LOC100823168 LOC4330331 LOC4329512 LOC100383192 LOC103627556 LOC8076027 LOC8059609 LOC110434868 LWD2 TTG1 ATAN11 LOC100779365 LOC100804923 LOC100818850 LOC101251160 LOC101260134 LOC101262902 LOC103843095 LOC103874320 WDR2 WDR1 LOC112326476 LOC7464471 LOC7466288 LOC11437531 LOC11440452 LOC107938089 LOC107914802 LOC107909399 LOC106401856 LOC106348480 LOC106412552 LOC102589991 LOC102593569 LOC102615088 LOC102607596 LOC107800718 LOC107824070 LOC107803204 CHLRE_16g674000v5
Function* WD repeat-containing protein LWD1-like protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD40 repeat protein protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1-like Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat 2 WD-repeat 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1-like protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00513 Various types of N-glycan biosynthesis 3
gma03060 Protein export 2
gma03083 Polycomb repressive complex 2
gma00510 N-Glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03083 Polycomb repressive complex 2
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 3
vvi03010 Ribosome 2
vvi00260 Glycine, serine and threonine metabolism 2
vvi00270 Cysteine and methionine metabolism 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
mtr01230 Biosynthesis of amino acids 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03083 Polycomb repressive complex 3
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 6
nta03083 Polycomb repressive complex 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 3
nta03083 Polycomb repressive complex 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123401825 123402235 123145107 123137081 123127421 100838616 100823168 4330331 4329512 100383192 103627556 8076027 8059609 110434868 822276 832523 837849 100779365 100804923 100818850 101251160 101260134 101262902 103843095 103874320 100241251 100248734 112326476 7464471 7466288 11437531 11440452 107938089 107914802 107909399 106401856 106348480 106412552 102589991 102593569 102615088 102607596 107800718 107824070 107803204 5721434
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