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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123402235   protein TRANSPARENT TESTA GLABRA 1 
 osa-u.5   4330331   protein TRANSPARENT TESTA GLABRA 1 
 osa-u.5   4329512   WD repeat-containing protein LWD1 
 zma-u.5   100383192   WD40 repeat protein 
 zma-u.5   103627556   protein TRANSPARENT TESTA GLABRA 1 
 ath-u.5   LWD2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   TTG1   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   ATAN11   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100779365   WD repeat-containing protein LWD1 
 gma-u.5   100782785   protein TRANSPARENT TESTA GLABRA 1 
 gma-u.5   100804923   protein TRANSPARENT TESTA GLABRA 1 
 sly-u.5   101251160   protein TRANSPARENT TESTA GLABRA 1 
 sly-u.5   101260134   WD repeat-containing protein LWD1 
 sly-u.5   101262902   protein TRANSPARENT TESTA GLABRA 1 
 vvi-u.5   WDR2   WD repeat 2 
 vvi-u.5   WDR1   WD-repeat 1 
 ppo-u.5   112326476   WD repeat-containing protein LWD1 
 ppo-u.5   7464471   protein TRANSPARENT TESTA GLABRA 1 
 ppo-u.5   7466288   WD repeat-containing protein LWD1 
 mtr-u.5   11437531   WD repeat-containing protein LWD1 
 mtr-u.5   11440452   protein TRANSPARENT TESTA GLABRA 1 

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Top 50 coexpressed genes to 123402235 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123402235 (hvu-r.1 coexpression data)

CoexMap"123402235"


hvuLOC123402235 | Entrez gene ID : 123402235    
Species hvu osa zma ath gma sly vvi ppo mtr bdi bra cit bna sbi ghi sot nta cre tae
Paralog 1 2 2 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03083 [list] [network] Polycomb repressive complex (95 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4692 genes)  IEA  
Protein XP_044952062.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_044952062.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044952062.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123402235
osa-u.5
for
4330331
osa-u.5
for
4329512
zma-u.5
for
100383192
zma-u.5
for
103627556
ath-u.5
for
LWD2
ath-u.5
for
TTG1
ath-u.5
for
ATAN11
gma-u.5
for
100779365
gma-u.5
for
100782785
gma-u.5
for
100804923
sly-u.5
for
101251160
sly-u.5
for
101260134
sly-u.5
for
101262902
vvi-u.5
for
WDR2
vvi-u.5
for
WDR1
ppo-u.5
for
112326476
ppo-u.5
for
7464471
ppo-u.5
for
7466288
mtr-u.5
for
11437531
mtr-u.5
for
11440452


Ortholog ID: 2559
Species hvu hvu tae tae bdi bdi osa osa zma zma sbi sbi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre
Symbol LOC123401825 LOC123402235 LOC123137081 LOC123127421 LOC100823168 LOC100838616 LOC4329512 LOC4330331 LOC103627556 LOC100383192 LOC110434868 LOC8059609 LWD2 TTG1 LOC100804923 LOC100779365 LOC101262902 LOC101251160 LOC103874320 LOC103843095 WDR2 WDR1 LOC7464471 LOC7466288 LOC11440452 LOC11437531 LOC107909399 LOC107938089 LOC106412552 LOC106401856 LOC102593569 LOC102589991 LOC102615088 LOC102607596 LOC107803204 LOC107800718 CHLRE_16g674000v5
Function* WD repeat-containing protein LWD1-like protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD40 repeat protein WD repeat-containing protein LWD1-like WD repeat-containing protein LWD1 Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat 2 WD-repeat 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00513 Various types of N-glycan biosynthesis 3
gma03060 Protein export 2
gma03083 Polycomb repressive complex 2
gma00510 N-Glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 3
vvi03010 Ribosome 2
vvi00260 Glycine, serine and threonine metabolism 2
vvi00270 Cysteine and methionine metabolism 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
mtr01230 Biosynthesis of amino acids 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 3
nta03083 Polycomb repressive complex 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 6
nta03083 Polycomb repressive complex 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123401825 123402235 123137081 123127421 100823168 100838616 4329512 4330331 103627556 100383192 110434868 8059609 822276 832523 100804923 100779365 101262902 101251160 103874320 103843095 100241251 100248734 7464471 7466288 11440452 11437531 107909399 107938089 106412552 106401856 102593569 102589991 102615088 102607596 107803204 107800718 5721434
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