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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123401890   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 tae-r.2   123135495   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 tae-r.2   123131677   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 tae-r.2   123143070   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 bdi-r.1   100829026   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 osa-u.5   4342714   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 zma-u.5   103632122   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 sbi-r.1   8078434   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ath-u.5   CSP41A   chloroplast stem-loop binding protein of 41 kDa 
 gma-u.5   100816596   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 gma-u.5   100795966   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 sly-u.5   544217   mRNA binding protein precursor 
 bra-r.6   103862714   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 vvi-u.5   100266662   uncharacterized LOC100266662 
 ppo-u.5   7480043   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ppo-u.5   7464675   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 mtr-u.5   11429745   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ghi-r.1   107951862   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ghi-r.1   107914655   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 bna-r.1   106369308   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 bna-r.1   106396732   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 sot-r.1   102586495   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 cit-r.1   102615327   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 nta-r.1   107779757   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 nta-r.1   107804230   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 cre-r.1   CHLRE_10g440050v5   uncharacterized protein 

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Top 50 coexpressed genes to 123401890 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123401890 (hvu-r.1 coexpression data)

CoexMap"123401890"


hvuLOC123401890 | Entrez gene ID : 123401890    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 1 1 2 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (223 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (938 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1359 genes)  IEA  
Protein XP_044951684.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044951684.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044951684.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123401890
tae-r.2
for
123135495
tae-r.2
for
123131677
tae-r.2
for
123143070
bdi-r.1
for
100829026
osa-u.5
for
4342714
zma-u.5
for
103632122
sbi-r.1
for
8078434
ath-u.5
for
CSP41A
gma-u.5
for
100816596
gma-u.5
for
100795966
sly-u.5
for
544217
bra-r.6
for
103862714
vvi-u.5
for
100266662
ppo-u.5
for
7480043
ppo-u.5
for
7464675
mtr-u.5
for
11429745
ghi-r.1
for
107951862
ghi-r.1
for
107914655
bna-r.1
for
106369308
bna-r.1
for
106396732
sot-r.1
for
102586495
cit-r.1
for
102615327
nta-r.1
for
107779757
nta-r.1
for
107804230
cre-r.1
for
CHLRE_10g440050v5


Ortholog ID: 9553
Species hvu tae tae tae bdi osa zma sbi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123401890 LOC123135495 LOC123131677 LOC123143070 LOC100829026 LOC4342714 LOC103632122 LOC8078434 CSP41A LOC100816596 LOC100795966 LOC544217 LOC103862714 LOC100266662 LOC7480043 LOC7464675 LOC11429745 LOC107951862 LOC107914655 LOC106369308 LOC106396732 LOC102586495 LOC102615327 LOC107779757 LOC107804230 CHLRE_10g440050v5
Function* chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic mRNA binding protein precursor chloroplast stem-loop binding protein of 41 kDa a, chloroplastic uncharacterized LOC100266662 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00195 Photosynthesis 5
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00710 Carbon fixation by Calvin cycle 6
bdi00195 Photosynthesis 4
bdi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 3
zma00710 Carbon fixation by Calvin cycle 2
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 8
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00710 Carbon fixation by Calvin cycle 4
ath00910 Nitrogen metabolism 2
ath00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
gma00785 Lipoic acid metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma01230 Biosynthesis of amino acids 3
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 11
sly00710 Carbon fixation by Calvin cycle 10
sly00030 Pentose phosphate pathway 5
sly01230 Biosynthesis of amino acids 4
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 5
bra01200 Carbon metabolism 5
bra00010 Glycolysis / Gluconeogenesis 4
bra01230 Biosynthesis of amino acids 3
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
vvi01200 Carbon metabolism 3
vvi00190 Oxidative phosphorylation 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 4
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 4
mtr00195 Photosynthesis 3
mtr00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 11
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 11
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00710 Carbon fixation by Calvin cycle 3
sot01230 Biosynthesis of amino acids 2
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit00195 Photosynthesis 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00195 Photosynthesis 4
nta00190 Oxidative phosphorylation 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 8
cre00710 Carbon fixation by Calvin cycle 7
cre00030 Pentose phosphate pathway 3
cre01230 Biosynthesis of amino acids 3
cre00630 Glyoxylate and dicarboxylate metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123401890 123135495 123131677 123143070 100829026 4342714 103632122 8078434 825489 100816596 100795966 544217 103862714 100266662 7480043 7464675 11429745 107951862 107914655 106369308 106396732 102586495 102615327 107779757 107804230 5715997
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