ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4342714	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
osa-r.6	4342714	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
osa-m.8	4342714	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
osa-e.1	4342714	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
zma-u.5	103632122	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
ath-u.5	CSP41A	chloroplast stem-loop binding protein of 41 kDa
gma-u.5	100816596	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
gma-u.5	100795966	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
sly-u.5	544217	mRNA binding protein precursor
vvi-u.5	100266662	uncharacterized LOC100266662
ppo-u.5	7480043	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
ppo-u.5	7464675	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
mtr-u.5	11429745	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0033499 [list] [network] galactose catabolic process via UDP-galactose, Leloir pathway

(16 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(929 genes)

IEA

GO MF

GO:0003978 [list] [network] UDP-glucose 4-epimerase activity

(9 genes)

IEA

Protein

XP_015645301.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_015645301.1)

Subcellular
localization
TargetP

chlo 8, mito 3

(predict for XP_015645301.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4342714	osa-r.6 for 4342714	osa-m.8 for 4342714	osa-e.1 for 4342714	zma-u.5 for 103632122	ath-u.5 for CSP41A	gma-u.5 for 100816596	gma-u.5 for 100795966	sly-u.5 for 544217	vvi-u.5 for 100266662	ppo-u.5 for 7480043	ppo-u.5 for 7464675	mtr-u.5 for 11429745

Ortholog

Ortholog ID: 9553

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CSP41A

Function^*

chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

chloroplast stem-loop binding protein of 41 kDa

chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

mRNA binding protein precursor

chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

uncharacterized LOC100266662

chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	9
hvu00710	Carbon fixation by Calvin cycle	6
hvu00195	Photosynthesis	5
hvu00630	Glyoxylate and dicarboxylate metabolism	5
hvu00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	7
bdi00710	Carbon fixation by Calvin cycle	6
bdi00195	Photosynthesis	4
bdi00630	Glyoxylate and dicarboxylate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00710	Carbon fixation by Calvin cycle	2
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	8
ath00630	Glyoxylate and dicarboxylate metabolism	5
ath00710	Carbon fixation by Calvin cycle	4
ath00910	Nitrogen metabolism	2
ath00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	4
gma00010	Glycolysis / Gluconeogenesis	3
gma00710	Carbon fixation by Calvin cycle	3
gma01230	Biosynthesis of amino acids	3
gma00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00260	Glycine, serine and threonine metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma00670	One carbon pool by folate	2
gma00785	Lipoic acid metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	11
sly00710	Carbon fixation by Calvin cycle	10
sly00030	Pentose phosphate pathway	5
sly01230	Biosynthesis of amino acids	4
sly00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00710	Carbon fixation by Calvin cycle	5
bra01200	Carbon metabolism	5
bra00010	Glycolysis / Gluconeogenesis	4
bra01230	Biosynthesis of amino acids	3
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	6
vvi01200	Carbon metabolism	3
vvi00190	Oxidative phosphorylation	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo01200	Carbon metabolism	7
ppo00710	Carbon fixation by Calvin cycle	4
ppo00010	Glycolysis / Gluconeogenesis	3
ppo00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	5
mtr00710	Carbon fixation by Calvin cycle	4
mtr00195	Photosynthesis	3
mtr00196	Photosynthesis - antenna proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	11
bna00710	Carbon fixation by Calvin cycle	11
bna01200	Carbon metabolism	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	11
bna00710	Carbon fixation by Calvin cycle	11
bna01200	Carbon metabolism	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	5
sot00630	Glyoxylate and dicarboxylate metabolism	4
sot00710	Carbon fixation by Calvin cycle	3
sot01230	Biosynthesis of amino acids	2
sot00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit00195	Photosynthesis	3
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta00190	Oxidative phosphorylation	2
nta00195	Photosynthesis	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta00195	Photosynthesis	4
nta00190	Oxidative phosphorylation	2
nta00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	8
cre00710	Carbon fixation by Calvin cycle	7
cre00030	Pentose phosphate pathway	3
cre01230	Biosynthesis of amino acids	3
cre00630	Glyoxylate and dicarboxylate metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

4342714

123135495

123131677

123401890

100829026

103632122

8078434

825489

100795966

100816596

544217

103862714

100266662

7464675

7480043

11429745

107914655

107951862

106369308

106396732

102586495

102615327

107804230

107779757

5715997

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4342714 (osa-u.5 coexpression data)

Top 50 enrichment test to 4342714 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4342714 (osa-u.5 coexpression data)

Top 50 enrichment test to 4342714 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**