ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
hvu-r.1	123449462	cell division control protein 48 homolog E-like
osa-u.5	4331645	cell division cycle protein 48 homolog
osa-u.5	4339880	cell division control protein 48 homolog C
zma-u.5	100279266	uncharacterized LOC100279266
zma-u.5	100278319	uncharacterized LOC100278319
zma-u.5	100279295	Cell division control protein 48 homolog C
ath-u.5	CIP111	Cam interacting protein 111
ath-u.5	CDC48	cell division cycle 48
gma-u.5	100799580	cell division cycle protein 48 homolog
gma-u.5	100800513	cell division control protein 48 homolog C
gma-u.5	CDC48	plamsma membrane-associated AAA-ATPase
sly-u.5	101245092	cell division control protein 48 homolog C
sly-u.5	101246391	cell division cycle protein 48 homolog
sly-u.5	101259229	cell division cycle protein 48 homolog
vvi-u.5	100265402	cell division cycle protein 48 homolog
vvi-u.5	100258668	cell division cycle protein 48 homolog
vvi-u.5	100261441	cell division control protein 48 homolog C
ppo-u.5	18100167	cell division cycle protein 48 homolog
ppo-u.5	7479654	calmodulin-interacting protein 111
mtr-u.5	11422689	calmodulin-interacting protein 111
mtr-u.5	11432951	cell division control protein 48 homolog D
mtr-u.5	25483983	cell division control protein 48 homolog E

Top 50 coexpressed genes to 123449462 (hvu-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123449462 (hvu-r.1 coexpression data)

CoexMap"123449462"

[Cytoscape]

Annotation

functional annotation

KEGG

hvg04141 [list] [network] Protein processing in endoplasmic reticulum (282 genes)

GO BP

GO:0051228 [list] [network] mitotic spindle disassembly	(14 genes)	IEA
GO:0097352 [list] [network] autophagosome maturation	(14 genes)	IEA
GO:0030970 [list] [network] retrograde protein transport, ER to cytosol	(15 genes)	IEA

GO CC

GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex	(18 genes)	IEA
GO:0005829 [list] [network] cytosol	(938 genes)	IEA
GO:0005634 [list] [network] nucleus	(3241 genes)	IEA

GO MF

GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding	(36 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(576 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2546 genes)	IEA

Protein

XP_044982634.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 1, nucl 1, plas 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1

(predict for XP_044982634.1)

Subcellular
localization
TargetP

chlo 8, other 3

(predict for XP_044982634.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123449462	osa-u.5 for 4331645	osa-u.5 for 4339880	zma-u.5 for 100279266	zma-u.5 for 100278319	zma-u.5 for 100279295	ath-u.5 for CIP111	ath-u.5 for CDC48	gma-u.5 for 100799580	gma-u.5 for 100800513	gma-u.5 for CDC48	sly-u.5 for 101245092	sly-u.5 for 101246391	sly-u.5 for 101259229	vvi-u.5 for 100265402	vvi-u.5 for 100258668	vvi-u.5 for 100261441	ppo-u.5 for 18100167	ppo-u.5 for 7479654	mtr-u.5 for 11422689	mtr-u.5 for 11432951	mtr-u.5 for 25483983

Ortholog

Ortholog ID: 216

Species

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CIP111

CDC48C

CDC48

Function^*

calmodulin-interacting protein 111

cell division control protein 48 homolog E

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

calmodulin-interacting protein 111

Cam interacting protein 111

cell division cycle 48C

cell division control protein 48 homolog C

plamsma membrane-associated AAA-ATPase

calmodulin-interacting protein 111-like

cell division cycle protein 48 homolog

calmodulin-interacting protein 111

cell division control protein 48 homolog A

cell division control protein 48 homolog C

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

calmodulin-interacting protein 111

cell division cycle protein 48 homolog

cell division control protein 48 homolog A

cell division control protein 48 homolog C-like

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

cell division cycle protein 48 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4
bdi03018	RNA degradation	2
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	9
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	4
osa01200	Carbon metabolism	3
osa00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	7
ath03040	Spliceosome	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra04141	Protein processing in endoplasmic reticulum	5
bra04144	Endocytosis	4
bra03250	Viral life cycle - HIV-1	3
bra03272	Virion - Hepatitis viruses	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2
vvi03040	Spliceosome	2
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	7
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna03050	Proteasome	4
bna00620	Pyruvate metabolism	3
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	10
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	7
nta03008	Ribosome biogenesis in eukaryotes	6
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta03015	mRNA surveillance pathway	3
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	14
cre04141	Protein processing in endoplasmic reticulum	3
cre04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

123109893

100834048

100821547

4348731

4331645

103633408

103637006

8067906

8060059

824836

821105

100800513

547850

101264384

101266255

103841568

103870514

100261441

100258668

7464706

7484424

25488675

107919937

107899473

106439184

106452770

102588443

102597683

102630724

107831296

107791620

5721861

5723159

The preparation time of this page was 2.8 [sec].


Species	hvu	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	2	3	3	3	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123449462 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123449462 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**