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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125574771   agamous-like MADS-box protein AGL5 
 bna-r.1   106373304   floral homeotic protein AGAMOUS 
 bna-r.1   106353173   agamous-like MADS-box protein AGL1 
 bna-r.1   106360950   agamous-like MADS-box protein AGL11 
 bra-r.6   103866661   agamous-like MADS-box protein AGL5 
 bra-r.6   103838884   agamous-like MADS-box protein AGL11 
 bra-r.6   103862959   agamous-like MADS-box protein AGL1 
 ath-u.5   SHP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AG   K-box region and MADS-box transcription factor family protein 
 ath-u.5   STK   K-box region and MADS-box transcription factor family protein 
 ghi-r.1   107914052   agamous-like MADS-box protein AGL11 
 ghi-r.1   107904906   agamous-like MADS-box protein AGL11 
 ghi-r.1   107925196   floral homeotic protein AGAMOUS-like 
 cit-r.1   102622291   agamous-like MADS-box protein MADS1 
 cit-r.1   102617808   agamous-like MADS-box protein MADS1 
 gma-u.5   100808734   agamous-like MADS-box protein MADS1 
 gma-u.5   AGL1L   agamous-like MADS-box protein AGL1-like 
 gma-u.5   100800107   floral homeotic protein AGAMOUS 
 vvi-u.5   AG   agamous 
 vvi-u.5   MADS1   MAD-box transcripion factor 
 vvi-u.5   MADS5   MADS-box protein 5 
 sly-u.5   AG1   floral homeotic protein AGAMOUS 
 sly-u.5   TAGL1   TAGL1 transcription factor 
 osa-u.5   9271572   MADS-box transcription factor 3-like 
 osa-u.5   4338067   MADS-box transcription factor 58-like 
 zma-u.5   542039   MADS-box transcription factor 21 
 zma-u.5   542244   homologue of Arabidopsis gene AGAMOUS 
 zma-u.5   542037   Agamous-like MADS-box protein AGL5 
 tae-r.2   100136965   MADS-box transcription factor 3 
 tae-r.2   542795   MADS-box transcription factor 58 
 tae-r.2   100136998   MADS-box transcription factor 21 
 sbi-r.1   110430121   MADS-box transcription factor 3-like 
 sbi-r.1   8080509   MADS-box transcription factor 3 
 bdi-r.1   100824190   MADS-box transcription factor 58-like 
 bdi-r.1   100841720   MADS-box transcription factor 3 

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Top 50 coexpressed genes to 125574771 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125574771 (bna-r.1 coexpression data)

CoexMap"125574771"


bnaLOC125574771 | Entrez gene ID : 125574771    
Species bna bra ath ghi cit gma vvi sly osa zma tae sbi bdi sot nta ppo cre mtr hvu
Paralog 4 3 3 3 2 3 3 2 2 3 3 2 2 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (509 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (968 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
Protein XP_013673080.1 [sequence] [blastp]
XP_013673081.1 [sequence] [blastp]
XP_013673082.1 [sequence] [blastp]
XP_022574669.2 [sequence] [blastp]
XP_022574671.2 [sequence] [blastp]
XP_022574672.2 [sequence] [blastp]
XP_022574673.2 [sequence] [blastp]
XP_022574674.2 [sequence] [blastp]
XP_022574675.2 [sequence] [blastp]
XP_022574676.1 [sequence] [blastp]
XP_048636346.1 [sequence] [blastp]
XP_048636347.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013673080.1)
nucl 10  (predict for XP_013673081.1)
nucl 10  (predict for XP_013673082.1)
nucl 9,  cyto 1  (predict for XP_022574669.2)
nucl 9,  cyto 1  (predict for XP_022574671.2)
nucl 9,  cyto 1  (predict for XP_022574672.2)
nucl 9,  cyto 1  (predict for XP_022574673.2)
nucl 9,  cyto 1  (predict for XP_022574674.2)
nucl 9,  cyto 1  (predict for XP_022574675.2)
nucl 10  (predict for XP_022574676.1)
nucl 9,  cyto 1  (predict for XP_048636346.1)
nucl 10  (predict for XP_048636347.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013673080.1)
other 9  (predict for XP_013673081.1)
other 9  (predict for XP_013673082.1)
other 9  (predict for XP_022574669.2)
other 9  (predict for XP_022574671.2)
other 9  (predict for XP_022574672.2)
other 9  (predict for XP_022574673.2)
other 9  (predict for XP_022574674.2)
other 9  (predict for XP_022574675.2)
other 9  (predict for XP_022574676.1)
other 9  (predict for XP_048636346.1)
other 9  (predict for XP_048636347.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125574771
bna-r.1
for
106373304
bna-r.1
for
106353173
bna-r.1
for
106360950
bra-r.6
for
103866661
bra-r.6
for
103838884
bra-r.6
for
103862959
ath-u.5
for
SHP1
ath-u.5
for
AG
ath-u.5
for
STK
ghi-r.1
for
107914052
ghi-r.1
for
107904906
ghi-r.1
for
107925196
cit-r.1
for
102622291
cit-r.1
for
102617808
gma-u.5
for
100808734
gma-u.5
for
AGL1L
gma-u.5
for
100800107
vvi-u.5
for
AG
vvi-u.5
for
MADS1
vvi-u.5
for
MADS5
sly-u.5
for
AG1
sly-u.5
for
TAGL1
osa-u.5
for
9271572
osa-u.5
for
4338067
zma-u.5
for
542039
zma-u.5
for
542244
zma-u.5
for
542037
tae-r.2
for
100136965
tae-r.2
for
542795
tae-r.2
for
100136998
sbi-r.1
for
110430121
sbi-r.1
for
8080509
bdi-r.1
for
100824190
bdi-r.1
for
100841720


Ortholog ID: 775
Species bna bna bna bra bra bra ath ath ghi ghi ghi cit cit gma gma gma vvi vvi vvi sly sly sly nta osa osa osa zma zma zma tae tae tae sbi sbi bdi bdi
Symbol LOC106353173 LOC106428192 LOC106397223 LOC103866661 LOC103861026 LOC103856965 SHP1 STK LOC107914052 LOC107904906 LOC107959674 LOC102622291 LOC102620453 LOC100808734 LOC100776263 AGL11 AG MADS1 MADS5 AG1 TAGL1 MBP3 LOC107777063 LOC9271572 LOC4338067 LOC4324888 LOC542039 LOC542244 LOC542037 LOC100136965 LOC100136998 LOC100136964 LOC110430121 LOC8080509 LOC100824190 LOC100841720
Function* agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein AGL5 floral homeotic protein AGAMOUS floral homeotic protein AGAMOUS K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein AGL11 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 agamous-like MADS-box protein MADS1 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 floral homeotic protein AGAMOUS-like MADS domain transporter AGL11 agamous MAD-box transcripion factor MADS-box protein 5 floral homeotic protein AGAMOUS TAGL1 transcription factor agamous-like MADS-box protein MBP3 agamous-like MADS-box protein AGL11 MADS-box transcription factor 3-like MADS-box transcription factor 58-like MADS-box transcription factor 21-like MADS-box transcription factor 21 homologue of Arabidopsis gene AGAMOUS Agamous-like MADS-box protein AGL5 MADS-box transcription factor 3 MADS-box transcription factor 21 MADS-box transcription factor 21 MADS-box transcription factor 3-like MADS-box transcription factor 3 MADS-box transcription factor 58-like MADS-box transcription factor 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 3
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00640 Propanoate metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00053 Ascorbate and aldarate metabolism 2
zma00071 Fatty acid degradation 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
bdi00941 Flavonoid biosynthesis 2
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106353173 106428192 106397223 103866661 103861026 103856965 825047 826586 107914052 107904906 107959674 102622291 102620453 100808734 100776263 100301905 100261787 100232864 100232870 543840 543841 101249093 107777063 9271572 4338067 4324888 542039 542244 542037 100136965 100136998 100136964 110430121 8080509 100824190 100841720
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