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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125575576   pentatricopeptide repeat-containing protein At4g33990-like 
 bna-r.1   106427283   pentatricopeptide repeat-containing protein At4g33990-like 
 bra-r.6   103851424   pentatricopeptide repeat-containing protein At4g33990 
 ath-u.5   EMB2758   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107935039   pentatricopeptide repeat-containing protein At4g33990 
 ghi-r.1   107908902   pentatricopeptide repeat-containing protein At4g33990 
 cit-r.1   102617894   pentatricopeptide repeat-containing protein At4g33990 
 gma-u.5   100802551   pentatricopeptide repeat-containing protein At4g33990 
 vvi-u.5   100254664   pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 vvi-u.5   100254933   pentatricopeptide repeat-containing protein At4g33990 
 vvi-u.5   100854677   pentatricopeptide repeat-containing protein At4g33990 
 ppo-u.5   7480423   pentatricopeptide repeat-containing protein At4g33990 
 mtr-u.5   11427801   pentatricopeptide repeat-containing protein At4g33990 
 sly-u.5   101249519   pentatricopeptide repeat-containing protein At4g33990 
 sot-r.1   102586450   pentatricopeptide repeat-containing protein At4g33990 
 nta-r.1   107810545   pentatricopeptide repeat-containing protein At4g33990-like 
 nta-r.1   107765449   pentatricopeptide repeat-containing protein At4g33990 
 tae-r.2   123168109   pentatricopeptide repeat-containing protein At4g33990 
 hvu-r.1   123408834   pentatricopeptide repeat-containing protein At4g33990 
 bdi-r.1   100820836   pentatricopeptide repeat-containing protein At4g33990 

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Top 50 coexpressed genes to 125575576 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125575576 (bna-r.1 coexpression data)

CoexMap"125575576"


bnaLOC125575576 | Entrez gene ID : 125575576    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta tae hvu bdi sbi zma cre osa
Paralog 2 1 1 2 1 1 3 1 1 1 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (870 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048605673.1 [sequence] [blastp]
XP_048605675.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  cyto_mito 4,  chlo 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_048605673.1)
chlo 6,  chlo_mito 4,  mito 2,  cyto_mito 1  (predict for XP_048605675.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_048605673.1)
mito 7,  scret 3  (predict for XP_048605675.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125575576
bna-r.1
for
106427283
bra-r.6
for
103851424
ath-u.5
for
EMB2758
ghi-r.1
for
107935039
ghi-r.1
for
107908902
cit-r.1
for
102617894
gma-u.5
for
100802551
vvi-u.5
for
100254664
vvi-u.5
for
100254933
vvi-u.5
for
100854677
ppo-u.5
for
7480423
mtr-u.5
for
11427801
sly-u.5
for
101249519
sot-r.1
for
102586450
nta-r.1
for
107810545
nta-r.1
for
107765449
tae-r.2
for
123168109
hvu-r.1
for
123408834
bdi-r.1
for
100820836


Ortholog ID: 11384
Species bna bna bra ath ghi ghi cit gma vvi vvi vvi ppo mtr sly sot nta nta tae hvu bdi
Symbol LOC125575576 LOC106427283 LOC103851424 EMB2758 LOC107935039 LOC107908902 LOC102617894 LOC100802551 LOC100254664 LOC100254933 LOC100854677 LOC7480423 LOC11427801 LOC101249519 LOC102586450 LOC107810545 LOC107765449 LOC123168109 LOC123408834 LOC100820836
Function* pentatricopeptide repeat-containing protein At4g33990-like pentatricopeptide repeat-containing protein At4g33990-like pentatricopeptide repeat-containing protein At4g33990 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990-like pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125575576 106427283 103851424 829546 107935039 107908902 102617894 100802551 100254664 100254933 100854677 7480423 11427801 101249519 102586450 107810545 107765449 123168109 123408834 100820836
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