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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480423   pentatricopeptide repeat-containing protein At4g33990 
 ppo-r.4   7480423   pentatricopeptide repeat-containing protein At4g33990 
 gma-u.5   100802551   pentatricopeptide repeat-containing protein At4g33990 
 mtr-u.5   11427801   pentatricopeptide repeat-containing protein At4g33990 
 ath-u.5   EMB2758   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100254933   pentatricopeptide repeat-containing protein At4g33990 
 vvi-u.5   100854677   pentatricopeptide repeat-containing protein At4g33990 
 vvi-u.5   100254664   pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 sly-u.5   101249519   pentatricopeptide repeat-containing protein At4g33990 

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Top 50 coexpressed genes to 7480423 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480423 (ppo-u.5 coexpression data)

CoexMap"7480423"


ppoLOC7480423 | Entrez gene ID : 7480423    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 2 1 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024444501.1 [sequence] [blastp]
XP_024444505.1 [sequence] [blastp]
XP_024444509.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 3,  nucl 2,  cyto_mito 1  (predict for XP_024444501.1)
chlo 4,  chlo_mito 4,  mito 3,  nucl 2,  cyto_mito 1  (predict for XP_024444505.1)
chlo 4,  chlo_mito 4,  mito 3,  nucl 2,  cyto_mito 1  (predict for XP_024444509.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_024444501.1)
mito 9  (predict for XP_024444505.1)
mito 9  (predict for XP_024444509.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480423

.
ppo-r.4
for
7480423

.
gma-u.5
for
100802551

.
mtr-u.5
for
11427801

.
ath-u.5
for
EMB2758

.
vvi-u.5
for
100254933

.
vvi-u.5
for
100854677

.
vvi-u.5
for
100254664

.
sly-u.5
for
101249519

.


Ortholog ID: 11384
Species ath gma sly bra vvi vvi ppo mtr tae hvu ghi ghi bna bna sot cit bdi nta nta
Symbol EMB2758 LOC100802551 LOC101249519 LOC103851424 LOC100854677 LOC100254664 LOC7480423 LOC11427801 LOC123168109 LOC123408834 LOC107908902 LOC107935039 LOC106427283 LOC125575576 LOC102586450 LOC102617894 LOC100820836 LOC107765449 LOC107810545
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At3g24000, mitochondrial pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990-like pentatricopeptide repeat-containing protein At4g33990-like pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990 pentatricopeptide repeat-containing protein At4g33990-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829546 100802551 101249519 103851424 100854677 100254664 7480423 11427801 123168109 123408834 107908902 107935039 106427283 125575576 102586450 102617894 100820836 107765449 107810545
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