ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125576611	DNA-directed RNA polymerase IV subunit 7-like
bna-r.1	106453721	DNA-directed RNA polymerase IV subunit 7-like
bra-r.6	103833463	DNA-directed RNA polymerase V subunit 7
bra-r.6	103834253	DNA-directed RNA polymerase IV subunit 7
ath-u.5	NRPD7	RNA polymerase Rpb7-like, N-terminal domain-containing protein
ath-u.5	NRPE7	RNA polymerase Rpb7-like, N-terminal domain-containing protein
ghi-r.1	107904403	DNA-directed RNA polymerase V subunit 7
ghi-r.1	107904797	DNA-directed RNA polymerase V subunit 7
cit-r.1	102629804	DNA-directed RNA polymerase V subunit 7
gma-u.5	100527862	uncharacterized LOC100527862
vvi-u.5	100261398	DNA-directed RNA polymerase II subunit RPB7-like
ppo-u.5	7473447	DNA-directed RNA polymerase V subunit 7
ppo-u.5	18102490	DNA-directed RNA polymerase V subunit 7
mtr-u.5	25485783	DNA-directed RNA polymerase V subunit 7
mtr-u.5	25484144	DNA-directed RNA polymerase V subunit 7
sly-u.5	101264710	DNA-directed RNA polymerase V subunit 7
sot-r.1	102584688	DNA-directed RNA polymerase V subunit 7-like
sot-r.1	102590183	DNA-directed RNA polymerase V subunit 7-like
sot-r.1	102592607	DNA-directed RNA polymerase V subunit 7-like
nta-r.1	107820955	DNA-directed RNA polymerase V subunit 7
nta-r.1	107807242	DNA-directed RNA polymerase V subunit 7-like
osa-u.5	107278405	DNA-directed RNA polymerase V subunit 7
osa-u.5	4337866	DNA-directed RNA polymerase V subunit 7
zma-u.5	100284005	uncharacterized LOC100284005
tae-r.2	123166313	DNA-directed RNA polymerase V subunit 7
hvu-r.1	123426139	DNA-directed RNA polymerase V subunit 7-like
sbi-r.1	8071189	DNA-directed RNA polymerase V subunit 7
bdi-r.1	100842749	DNA-directed RNA polymerase V subunit 7
bdi-r.1	100836334	DNA-directed RNA polymerase V subunit 7

Top 50 coexpressed genes to 125576611 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125576611 (bna-r.1 coexpression data)

CoexMap"125576611"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03020 [list] [network] RNA polymerase (161 genes)

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation	(224 genes)	IEA
GO:0006351 [list] [network] DNA-templated transcription	(740 genes)	IEA

GO CC

GO MF

GO:0003727 [list] [network] single-stranded RNA binding	(72 genes)	IEA
GO:0003697 [list] [network] single-stranded DNA binding	(274 genes)	IEA

Protein

XP_048593010.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_nucl 4, chlo 2, cysk_nucl 1, nucl 1

(predict for XP_048593010.1)

Subcellular
localization
TargetP

other 6, scret 5

(predict for XP_048593010.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125576611	bna-r.1 for 106453721	bra-r.6 for 103833463	bra-r.6 for 103834253	ath-u.5 for NRPD7	ath-u.5 for NRPE7	ghi-r.1 for 107904403	ghi-r.1 for 107904797	cit-r.1 for 102629804	gma-u.5 for 100527862	vvi-u.5 for 100261398	ppo-u.5 for 7473447	ppo-u.5 for 18102490	mtr-u.5 for 25485783	mtr-u.5 for 25484144	sly-u.5 for 101264710	sot-r.1 for 102584688	sot-r.1 for 102590183	sot-r.1 for 102592607	nta-r.1 for 107820955	nta-r.1 for 107807242	osa-u.5 for 107278405	osa-u.5 for 4337866	zma-u.5 for 100284005	tae-r.2 for 123166313	hvu-r.1 for 123426139	sbi-r.1 for 8071189	bdi-r.1 for 100842749	bdi-r.1 for 100836334

Ortholog

Ortholog ID: 4917

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NRPD7

NRPE7

Function^*

DNA-directed RNA polymerase IV subunit 7-like