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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125580305   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 
 bna-r.1   125574915   pentatricopeptide repeat-containing protein At3g13150-like 
 bna-r.1   106391361   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 
 bna-r.1   106412418   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 bra-r.6   103868377   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 bra-r.6   103859502   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ath-u.5   AT3G13150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G13160   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   121222435   pentatricopeptide repeat-containing protein At3g13150 
 ghi-r.1   107940940   pentatricopeptide repeat-containing protein At3g13150 
 ghi-r.1   107925032   pentatricopeptide repeat-containing protein At3g13150 
 cit-r.1   102616927   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 
 gma-u.5   100804582   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 gma-u.5   100804069   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 vvi-u.5   100255730   small ribosomal subunit protein mS79 (rPPR3b) 
 ppo-u.5   7490687   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 ppo-u.5   18109029   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ppo-u.5   7497035   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 mtr-u.5   112421368   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 sly-u.5   101267373   small ribosomal subunit protein mS78 (rPPR3a) 
 sly-u.5   101250372   small ribosomal subunit protein mS78 (rPPR3a) 
 sot-r.1   107058656   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 sot-r.1   102584900   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 sot-r.1   102598145   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 nta-r.1   107830133   uncharacterized LOC107830133 
 nta-r.1   107791748   uncharacterized LOC107791748 
 nta-r.1   107791747   small ribosomal subunit protein mS79 (rPPR3b) 

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Top 50 coexpressed genes to 125580305 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125580305 (bna-r.1 coexpression data)

CoexMap"125580305"


bnaLOC125580305 | Entrez gene ID : 125580305    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta zma cre sbi tae osa hvu bdi
Paralog 4 2 3 3 1 2 1 3 1 2 3 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048600591.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_048600591.1)
Subcellular
localization
TargetP
mito 7,  chlo 4  (predict for XP_048600591.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125580305
bna-r.1
for
125574915
bna-r.1
for
106391361
bna-r.1
for
106412418
bra-r.6
for
103868377
bra-r.6
for
103859502
ath-u.5
for
AT3G13150
ath-u.5
for
AT3G13160
ath-u.5
for
AT1G55890
ghi-r.1
for
121222435
ghi-r.1
for
107940940
ghi-r.1
for
107925032
cit-r.1
for
102616927
gma-u.5
for
100804582
gma-u.5
for
100804069
vvi-u.5
for
100255730
ppo-u.5
for
7490687
ppo-u.5
for
18109029
ppo-u.5
for
7497035
mtr-u.5
for
112421368
sly-u.5
for
101267373
sly-u.5
for
101250372
sot-r.1
for
107058656
sot-r.1
for
102584900
sot-r.1
for
102598145
nta-r.1
for
107830133
nta-r.1
for
107791748
nta-r.1
for
107791747


Ortholog ID: 4229
Species bna bna bna bra ath ath ath ghi ghi ghi cit gma gma vvi ppo ppo ppo mtr sly sly sot sot sot nta nta nta
Symbol LOC125580305 LOC125574915 LOC106377515 LOC103859502 AT3G13150 AT3G13160 AT1G55890 LOC121222435 LOC107940940 LOC107925032 LOC102616927 LOC100804582 LOC100804069 LOC100255730 LOC7490687 LOC18109029 LOC7497035 LOC112421368 LOC101267373 LOC101250372 LOC107058656 LOC102584900 LOC102598145 LOC107830133 LOC107783523 LOC107770670
Function* pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At3g13150-like pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13160, mitochondrial Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial small ribosomal subunit protein mS79 (rPPR3b) pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial small ribosomal subunit protein mS78 (rPPR3a) small ribosomal subunit protein mS78 (rPPR3a) pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like uncharacterized LOC107830133 uncharacterized LOC107783523 uncharacterized LOC107770670
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00020 Citrate cycle (TCA cycle) 2
nta00270 Cysteine and methionine metabolism 2
nta00566 Sulfoquinovose metabolism 2
nta00620 Pyruvate metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125580305 125574915 106377515 103859502 820503 820505 842039 121222435 107940940 107925032 102616927 100804582 100804069 100255730 7490687 18109029 7497035 112421368 101267373 101250372 107058656 102584900 102598145 107830133 107783523 107770670
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