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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107791748   uncharacterized LOC107791748 
 nta-r.1   107830133   uncharacterized LOC107830133 
 nta-r.1   107791747   small ribosomal subunit protein mS79 (rPPR3b) 
 nta-r.1   107783523   uncharacterized LOC107783523 
 sly-u.5   101267373   small ribosomal subunit protein mS78 (rPPR3a) 
 sly-u.5   101250372   small ribosomal subunit protein mS78 (rPPR3a) 
 sot-r.1   102584900   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 sot-r.1   102598145   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 sot-r.1   107058656   pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like 
 ath-u.5   AT3G13150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G13160   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100804582   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 gma-u.5   100804069   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 bra-r.6   103868377   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 bra-r.6   103859502   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 vvi-u.5   100255730   small ribosomal subunit protein mS79 (rPPR3b) 
 ppo-u.5   7490687   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 ppo-u.5   7494315   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ppo-u.5   18102944   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 mtr-u.5   112421368   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 ghi-r.1   107901777   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ghi-r.1   107925032   pentatricopeptide repeat-containing protein At3g13150 
 ghi-r.1   107940940   pentatricopeptide repeat-containing protein At3g13150 
 bna-r.1   125580305   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 
 bna-r.1   125574915   pentatricopeptide repeat-containing protein At3g13150-like 
 bna-r.1   106377516   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 cit-r.1   102616927   pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like 

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Top 50 coexpressed genes to 107791748 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107791748 (nta-r.1 coexpression data)

CoexMap"107791748"


ntaLOC107791748 | Entrez gene ID : 107791748      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit zma cre sbi tae osa hvu bdi
Paralog 4 2 3 3 2 2 1 3 1 3 3 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031930 [list] [network] mitochondria-nucleus signaling pathway  (26 genes)  IEA  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (28 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1165 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016469367.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  extr 2,  nucl 1,  chlo_mito 1  (predict for XP_016469367.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016469367.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107791748
nta-r.1
for
107830133
nta-r.1
for
107791747
nta-r.1
for
107783523
sly-u.5
for
101267373
sly-u.5
for
101250372
sot-r.1
for
102584900
sot-r.1
for
102598145
sot-r.1
for
107058656
ath-u.5
for
AT3G13150
ath-u.5
for
AT3G13160
ath-u.5
for
AT1G55890
gma-u.5
for
100804582
gma-u.5
for
100804069
bra-r.6
for
103868377
bra-r.6
for
103859502
vvi-u.5
for
100255730
ppo-u.5
for
7490687
ppo-u.5
for
7494315
ppo-u.5
for
18102944
mtr-u.5
for
112421368
ghi-r.1
for
107901777
ghi-r.1
for
107925032
ghi-r.1
for
107940940
bna-r.1
for
125580305
bna-r.1
for
125574915
bna-r.1
for
106377516
cit-r.1
for
102616927


Ortholog ID: 4229
Species nta nta nta sly sly sot sot sot ath ath ath gma gma bra vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna cit
Symbol LOC107830133 LOC107783523 LOC107770670 LOC101267373 LOC101250372 LOC102584900 LOC102598145 LOC107058656 AT3G13150 AT3G13160 AT1G55890 LOC100804582 LOC100804069 LOC103859502 LOC100255730 LOC7490687 LOC7497035 LOC18109029 LOC112421368 LOC107925032 LOC107940940 LOC121222435 LOC125580305 LOC125574915 LOC106377515 LOC102616927
Function* uncharacterized LOC107830133 uncharacterized LOC107783523 uncharacterized LOC107770670 small ribosomal subunit protein mS78 (rPPR3a) small ribosomal subunit protein mS78 (rPPR3a) pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial small ribosomal subunit protein mS79 (rPPR3b) pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At3g13150-like pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00020 Citrate cycle (TCA cycle) 2
nta00270 Cysteine and methionine metabolism 2
nta00566 Sulfoquinovose metabolism 2
nta00620 Pyruvate metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107830133 107783523 107770670 101267373 101250372 102584900 102598145 107058656 820503 820505 842039 100804582 100804069 103859502 100255730 7490687 7497035 18109029 112421368 107925032 107940940 121222435 125580305 125574915 106377515 102616927
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