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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G13150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G13160   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100804582   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 gma-u.5   100804069   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 vvi-u.5   100255730   small ribosomal subunit protein mS79 (rPPR3b) 
 ppo-u.5   18102944   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ppo-u.5   7490687   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 ppo-u.5   7494315   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 mtr-u.5   112421368   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 sly-u.5   101267373   small ribosomal subunit protein mS78 (rPPR3a) 
 sly-u.5   101250372   small ribosomal subunit protein mS78 (rPPR3a) 

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Top 50 coexpressed genes to AT1G55890 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G55890 (ath-u.5 coexpression data)

CoexMap"842039"


athAT1G55890 | Entrez gene ID : 842039      
Species ath gma vvi ppo mtr sly hvu osa sot tae nta bra cit ghi zma bna bdi sbi cre
Paralog 11 2 1 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_175985.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for NP_175985.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for NP_175985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G55890

.
ath-r.7
for
AT1G55890

.
ath-m.9
for
AT1G55890

.
ath-e.2
for
AT1G55890

.
ath-m.4.bio
for
AT1G55890

.
ath-m.4.hor
for
AT1G55890

.
ath-m.4.lig
for
AT1G55890

.
ath-m.4.str
for
AT1G55890

.
ath-m.4.tis
for
AT1G55890

.
ath-u.5
for
AT3G13150

.
ath-u.5
for
AT3G13160

.
gma-u.5
for
100804582

.
gma-u.5
for
100804069

.
vvi-u.5
for
100255730

.
ppo-u.5
for
18102944

.
ppo-u.5
for
7490687

.
ppo-u.5
for
7494315

.
mtr-u.5
for
112421368

.
sly-u.5
for
101267373

.
sly-u.5
for
101250372

.


Ortholog ID: 4229
Species ath ath gma gma sly ppo ppo mtr ghi ghi bna bna sot sot cit nta nta
Symbol AT3G13150 AT3G13160 LOC100804069 LOC100804582 LOC101250372 LOC7497035 LOC18109029 LOC112421368 LOC121222435 LOC107925032 LOC125574915 LOC125580305 LOC102598145 LOC102584900 LOC102616927 LOC107770670 LOC107783523
Function* Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial small ribosomal subunit protein mS78 (rPPR3a) pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like uncharacterized LOC107770670 uncharacterized LOC107783523
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820503 820505 100804069 100804582 101250372 7497035 18109029 112421368 121222435 107925032 125574915 125580305 102598145 102584900 102616927 107770670 107783523
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