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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107901777   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ath-u.5   AT3G13150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G13160   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT1G55890   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100804582   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 gma-u.5   100804069   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 vvi-u.5   100255730   small ribosomal subunit protein mS79 (rPPR3b) 
 ppo-u.5   7490687   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 ppo-u.5   18109029   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 ppo-u.5   7497035   pentatricopeptide repeat-containing protein At3g13160, mitochondrial 
 mtr-u.5   112421368   pentatricopeptide repeat-containing protein At1g55890, mitochondrial 
 sly-u.5   101267373   small ribosomal subunit protein mS78 (rPPR3a) 
 sly-u.5   101250372   small ribosomal subunit protein mS78 (rPPR3a) 

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Top 50 coexpressed genes to 107901777 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107901777 (ghi-r.1 coexpression data)

CoexMap"107901777"


ghiLOC107901777 | Entrez gene ID : 107901777    
Species ghi ath gma vvi ppo mtr sly hvu zma bna cit bra osa sbi bdi nta tae cre sot
Paralog 1 3 2 1 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016683411.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3,  cyto_mito 2  (predict for XP_016683411.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_016683411.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107901777
ath-u.5
for
AT3G13150
ath-u.5
for
AT3G13160
ath-u.5
for
AT1G55890
gma-u.5
for
100804582
gma-u.5
for
100804069
vvi-u.5
for
100255730
ppo-u.5
for
7490687
ppo-u.5
for
18109029
ppo-u.5
for
7497035
mtr-u.5
for
112421368
sly-u.5
for
101267373
sly-u.5
for
101250372


Ortholog ID: 4229
Species ghi ghi ath ath bna bna cit gma gma ppo ppo mtr sly sot sot nta nta
Symbol LOC121222435 LOC107925032 AT3G13150 AT3G13160 LOC125574915 LOC125580305 LOC102616927 LOC100804069 LOC100804582 LOC7497035 LOC18109029 LOC112421368 LOC101250372 LOC102598145 LOC102584900 LOC107770670 LOC107783523
Function* pentatricopeptide repeat-containing protein At3g13150 pentatricopeptide repeat-containing protein At3g13150 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g13150-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At3g13160, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At3g13160, mitochondrial pentatricopeptide repeat-containing protein At1g55890, mitochondrial small ribosomal subunit protein mS78 (rPPR3a) pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like uncharacterized LOC107770670 uncharacterized LOC107783523
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121222435 107925032 820503 820505 125574915 125580305 102616927 100804069 100804582 7497035 18109029 112421368 101250372 102598145 102584900 107770670 107783523
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