ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	SDN1	small RNA degrading nuclease 1
ath-u.5	SDN2	small RNA degrading nuclease 2
gma-u.5	100785565	small RNA degrading nuclease 3
vvi-u.5	100254172	small RNA degrading nuclease 1
ppo-u.5	7483093	small RNA degrading nuclease 1
mtr-u.5	25485770	small RNA degrading nuclease 1
sly-u.5	101248438	small RNA degrading nuclease 1-like
osa-u.5	4337228	small RNA degrading nuclease 1
zma-u.5	103645842	small RNA degrading nuclease 1

functional annotation

KEGG

bna03008 [list] [network] Ribosome biogenesis in eukaryotes (6477 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0004527 [list] [network] exonuclease activity	(217 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(12766 genes)	IEA

Protein

XP_048608300.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9

(predict for XP_048608300.1)

Subcellular
localization
TargetP

other 9

(predict for XP_048608300.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SDN1	ath-u.5 for SDN2	gma-u.5 for 100785565	vvi-u.5 for 100254172	ppo-u.5 for 7483093	mtr-u.5 for 25485770	sly-u.5 for 101248438	osa-u.5 for 4337228	zma-u.5 for 103645842

Ortholog ID: 4405

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SDN1

Function^*

small RNA degrading nuclease 2-like

small RNA degrading nuclease 3

small RNA degrading nuclease 3-like

small RNA degrading nuclease 1

small RNA degrading nuclease 3

small RNA degrading nuclease 1

small RNA degrading nuclease 1-like

small RNA degrading nuclease 1

small RNA degrading nuclease 3

small RNA degrading nuclease 1-like

small RNA degrading nuclease 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	8
bra03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	5
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2
ghi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03050	Proteasome	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

106346009

106390333

103829525

103829878

824172

107913580

107891333

102628898

100785565

100254172

7483093

25485770

101248438

102581137

107798545

107789081

4337228

103645842

123050356

123428130

8068490

100838655

66052100

5718102

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SDN1 (ath-u.5 coexpression data)

Top 50 enrichment test to SDN1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SDN1 (ath-u.5 coexpression data)

Top 50 enrichment test to SDN1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**