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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125586972   F-box protein At1g47056-like 
 ath-u.5   VFB2   VIER F-box protein 2 
 ath-u.5   VFB3   VIER F-box protein 3 
 ath-u.5   SKIP2   SKP1/ASK1-interacting protein 2 
 gma-u.5   100817022   F-box protein SKIP2 
 gma-u.5   100788163   F-box protein At1g47056 
 vvi-u.5   100852716   F-box protein SKIP2 
 vvi-u.5   100259063   F-box protein At1g47056 
 vvi-u.5   100250708   F-box protein At1g47056 
 ppo-u.5   7472683   F-box protein At1g47056 
 ppo-u.5   7476400   F-box protein SKIP2 
 ppo-u.5   7462590   F-box protein SKIP2 
 mtr-u.5   112421285   F-box protein SKIP2 
 mtr-u.5   11420387   F-box protein At1g47056 
 sly-u.5   101247773   F-box protein SKIP2 
 sly-u.5   101246998   F-box protein SKIP2-like 
 sly-u.5   101245757   F-box protein At1g47056 
 osa-u.5   4336338   F-box protein At1g47056 
 osa-u.5   4346401   F-box protein At1g47056 
 zma-u.5   103632351   F-box protein At1g47056 
 zma-u.5   100284044   uncharacterized LOC100284044 
 zma-u.5   100279556   uncharacterized LOC100279556 

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Top 50 coexpressed genes to 125586972 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125586972 (bna-r.1 coexpression data)

CoexMap"125586972"


bnaLOC125586972 | Entrez gene ID : 125586972    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 3 2 3 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (170 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (134 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048612942.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 4,  nucl 3,  mito 1  (predict for XP_048612942.1)
Subcellular
localization
TargetP
other 4,  chlo 3,  mito 3  (predict for XP_048612942.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125586972

.
ath-u.5
for
VFB2

.
ath-u.5
for
VFB3

.
ath-u.5
for
SKIP2

.
gma-u.5
for
100817022

.
gma-u.5
for
100788163

.
vvi-u.5
for
100852716

.
vvi-u.5
for
100259063

.
vvi-u.5
for
100250708

.
ppo-u.5
for
7472683

.
ppo-u.5
for
7476400

.
ppo-u.5
for
7462590

.
mtr-u.5
for
112421285

.
mtr-u.5
for
11420387

.
sly-u.5
for
101247773

.
sly-u.5
for
101246998

.
sly-u.5
for
101245757

.
osa-u.5
for
4336338

.
osa-u.5
for
4346401

.
zma-u.5
for
103632351

.
zma-u.5
for
100284044

.
zma-u.5
for
100279556

.


Ortholog ID: 1465
Species ath ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol VFB3 VFB2 LOC100807711 LOC101246998 LOC101247773 LOC4346401 LOC4336338 LOC100279556 LOC100284044 LOC103829524 LOC103837742 LOC100250708 LOC100852716 LOC18104843 LOC7472683 LOC112421285 LOC11420387 LOC123053845 LOC123120677 LOC123427190 LOC123452403 LOC107931670 LOC107922226 LOC125586972 LOC106405922 CHLRE_01g047650v5 LOC8063875 LOC110436572 LOC102585400 LOC107062868 LOC102629556 LOC102622449 LOC100833356 LOC100846537 LOC107782164 LOC142170645
Function* VIER F-box protein 3 VIER F-box protein 2 F-box protein SKIP2 F-box protein SKIP2-like F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 uncharacterized LOC100279556 uncharacterized LOC100284044 F-box protein SKIP2 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056-like F-box/LRR-repeat protein 16 uncharacterized protein F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like putative F-box/LRR-repeat protein 8 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
bdi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826171 824170 100807711 101246998 101247773 4346401 4336338 100279556 100284044 103829524 103837742 100250708 100852716 18104843 7472683 112421285 11420387 123053845 123120677 123427190 123452403 107931670 107922226 125586972 106405922 5715688 8063875 110436572 102585400 107062868 102629556 102622449 100833356 100846537 107782164 142170645
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