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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125591572   pre-mRNA-processing factor 39-2-like 
 ath-u.5   PRP39-2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   PRP39   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100787373   pre-mRNA-processing factor 39 
 gma-u.5   100810738   pre-mRNA-processing factor 39 
 gma-u.5   100780705   RNA polymerase II degradation factor 1 
 vvi-u.5   100244562   pre-mRNA-processing factor 39-1 
 vvi-u.5   100243465   pre-mRNA-processing factor 39-2 
 ppo-u.5   7461490   pre-mRNA-processing factor 39-1 
 ppo-u.5   7455695   pre-mRNA-processing factor 39-1 
 mtr-u.5   11430831   pre-mRNA-processing factor 39 
 mtr-u.5   11426586   uncharacterized LOC11426586 
 sly-u.5   101247553   pre-mRNA-processing factor 39-1 
 sly-u.5   101258918   pre-mRNA-processing factor 39-2 
 osa-u.5   4332022   pre-mRNA-processing factor 39-1 
 osa-u.5   4345436   pre-mRNA-processing factor 39-2 
 zma-u.5   100304428   uncharacterized LOC100304428 
 zma-u.5   100383763   Tetratricopeptide repeat (TPR)-like superfamily protein 
 zma-u.5   103643333   uncharacterized LOC103643333 

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Top 50 coexpressed genes to 125591572 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125591572 (bna-r.1 coexpression data)

CoexMap"125591572"


bnaLOC125591572 | Entrez gene ID : 125591572    
Species bna ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre nta bdi bra
Paralog 1 2 3 2 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000395 [list] [network] mRNA 5'-splice site recognition  (14 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (1786 genes)  IEA  
GO CC
GO:0000243 [list] [network] commitment complex  (31 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (106 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048621952.1 [sequence] [blastp]
XP_048621953.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1,  chlo 1,  mito 1,  pero 1,  golg 1,  chlo_mito 1,  nucl_plas 1,  cysk_plas 1  (predict for XP_048621952.1)
mito 4,  chlo 4,  cyto 1  (predict for XP_048621953.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_048621952.1)
other 4  (predict for XP_048621953.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125591572

.
ath-u.5
for
PRP39-2

.
ath-u.5
for
PRP39

.
gma-u.5
for
100787373

.
gma-u.5
for
100810738

.
gma-u.5
for
100780705

.
vvi-u.5
for
100244562

.
vvi-u.5
for
100243465

.
ppo-u.5
for
7461490

.
ppo-u.5
for
7455695

.
mtr-u.5
for
11430831

.
mtr-u.5
for
11426586

.
sly-u.5
for
101247553

.
sly-u.5
for
101258918

.
osa-u.5
for
4332022

.
osa-u.5
for
4345436

.
zma-u.5
for
100304428

.
zma-u.5
for
100383763

.
zma-u.5
for
103643333

.


Ortholog ID: 2673
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PRP39-2 PRP39 LOC100780705 LOC100787373 LOC101247553 LOC101258918 LOC4345436 LOC4332022 LOC100383763 LOC100304428 LOC103827735 LOC103836592 LOC100243465 LOC100244562 LOC7461490 LOC7455695 LOC11426586 LOC11430831 LOC123044657 LOC123131708 LOC123425869 LOC123425870 LOC107893821 LOC107905856 LOC125591572 LOC125594479 CHLRE_16g670300v5 LOC8073505 LOC8081848 LOC102590021 LOC102585073 LOC102614451 LOC102607594 LOC100837794 LOC100842484 LOC107789835 LOC107789600
Function* Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein RNA polymerase II degradation factor 1 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC100304428 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-1 uncharacterized LOC11426586 pre-mRNA-processing factor 39 uncharacterized LOC123044657 pre-mRNA-processing factor 39 polyhomeotic-proximal chromatin protein uncharacterized LOC123425870 pre-mRNA-processing factor 39 putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39-2-like pre-mRNA-processing factor 39-2-like uncharacterized protein putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39 uncharacterized LOC102590021 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 uncharacterized LOC100837794 pre-mRNA-processing factor 39 uncharacterized LOC107789835 pre-mRNA-processing factor 39-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03013 Nucleocytoplasmic transport 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834683 839314 100780705 100787373 101247553 101258918 4345436 4332022 100383763 100304428 103827735 103836592 100243465 100244562 7461490 7455695 11426586 11430831 123044657 123131708 123425869 123425870 107893821 107905856 125591572 125594479 5724786 8073505 8081848 102590021 102585073 102614451 102607594 100837794 100842484 107789835 107789600
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