ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125608998	glutamate decarboxylase 5-like
bna-r.1	106380065	glutamate decarboxylase 5
bna-r.1	111211020	glutamate decarboxylase 1-like
bna-r.1	106396040	glutamate decarboxylase 4
bra-r.6	103846253	glutamate decarboxylase 1
bra-r.6	103856243	glutamate decarboxylase 1
ath-u.5	GAD	glutamate decarboxylase
ath-u.5	GAD4	glutamate decarboxylase 4
ghi-r.1	107946304	glutamate decarboxylase
ghi-r.1	107937128	glutamate decarboxylase
ghi-r.1	107931028	glutamate decarboxylase
cit-r.1	102612842	glutamate decarboxylase-like
cit-r.1	102611084	glutamate decarboxylase 5-like
gma-u.5	100796475	glutamate decarboxylase
gma-u.5	100796533	glutamate decarboxylase
gma-u.5	100783047	glutamate decarboxylase
vvi-u.5	100266215	glutamate decarboxylase 1
vvi-u.5	100265999	glutamate decarboxylase
vvi-u.5	100261008	glutamate decarboxylase 4
ppo-u.5	7494518	glutamate decarboxylase 1
ppo-u.5	7457832	glutamate decarboxylase 4
mtr-u.5	11433639	glutamate decarboxylase 1
mtr-u.5	25496687	glutamate decarboxylase
mtr-u.5	120577330	glutamate decarboxylase 4
sly-u.5	GAD3	glutamate decarboxylase isoform3
sly-u.5	GAD2	glutamate decarboxylase isoform2
sly-u.5	101251185	glutamate decarboxylase-like
sot-r.1	102594980	glutamate decarboxylase-like
sot-r.1	102581388	glutamate decarboxylase
sot-r.1	102581196	glutamate decarboxylase 4-like
nta-r.1	107804984	glutamate decarboxylase-like
nta-r.1	107819266	glutamate decarboxylase 4-like
nta-r.1	107815063	glutamate decarboxylase-like
osa-u.5	4345787	glutamate decarboxylase 1
osa-u.5	4332184	glutamate decarboxylase 1
osa-u.5	4333932	glutamate decarboxylase 1
zma-u.5	100191549	uncharacterized LOC100191549
zma-u.5	100284394	glutamate decarboxylase
zma-u.5	100273302	Pyridoxal phosphate (PLP)-dependent transferase superfamily protein
tae-r.2	123045593	glutamate decarboxylase
hvu-r.1	123447564	glutamate decarboxylase 1-like
hvu-r.1	123430344	glutamate decarboxylase 2-like
sbi-r.1	8085236	glutamate decarboxylase 1
sbi-r.1	8073378	glutamate decarboxylase 2
sbi-r.1	8065836	glutamate decarboxylase
bdi-r.1	100831497	glutamate decarboxylase
bdi-r.1	100831298	glutamate decarboxylase 1
bdi-r.1	100832185	glutamate decarboxylase 1

Top 50 coexpressed genes to 125608998 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125608998 (bna-r.1 coexpression data)

CoexMap"125608998"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00250 [list] [network] Alanine, aspartate and glutamate metabolism (182 genes)

bna00410 [list] [network] beta-Alanine metabolism (137 genes)

bna00430 [list] [network] Taurine and hypotaurine metabolism (47 genes)

bna00650 [list] [network] Butanoate metabolism (72 genes)

GO BP

GO:0006538 [list] [network] L-glutamate catabolic process

(35 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(3196 genes)

IEA

GO MF

GO:0004351 [list] [network] glutamate decarboxylase activity	(22 genes)	IEA
GO:0030170 [list] [network] pyridoxal phosphate binding	(309 genes)	IEA

Protein

XP_048635646.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cysk 3, cyto_nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3

(predict for XP_048635646.1)

Subcellular
localization
TargetP

other 6

(predict for XP_048635646.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125608998	bna-r.1 for 106380065	bna-r.1 for 111211020	bna-r.1 for 106396040	bra-r.6 for 103846253	bra-r.6 for 103856243	ath-u.5 for GAD	ath-u.5 for GAD4	ghi-r.1 for 107946304	ghi-r.1 for 107937128	ghi-r.1 for 107931028	cit-r.1 for 102612842	cit-r.1 for 102611084	gma-u.5 for 100796475	gma-u.5 for 100796533	gma-u.5 for 100783047	vvi-u.5 for 100266215	vvi-u.5 for 100265999	vvi-u.5 for 100261008	ppo-u.5 for 7494518	ppo-u.5 for 7457832	mtr-u.5 for 11433639	mtr-u.5 for 25496687	mtr-u.5 for 120577330	sly-u.5 for GAD3	sly-u.5 for GAD2	sly-u.5 for 101251185	sot-r.1 for 102594980	sot-r.1 for 102581388	sot-r.1 for 102581196	nta-r.1 for 107804984	nta-r.1 for 107819266	nta-r.1 for 107815063	osa-u.5 for 4345787	osa-u.5 for 4332184	osa-u.5 for 4333932	zma-u.5 for 100191549	zma-u.5 for 100284394	zma-u.5 for 100273302	tae-r.2 for 123045593	hvu-r.1 for 123447564	hvu-r.1 for 123430344	sbi-r.1 for 8085236	sbi-r.1 for 8073378	sbi-r.1 for 8065836	bdi-r.1 for 100831497	bdi-r.1 for 100831298	bdi-r.1 for 100832185

Ortholog

Ortholog ID: 523

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

GAD

GAD3

GAD2

Function^*

glutamate decarboxylase 1-like

glutamate decarboxylase 2

glutamate decarboxylase 1

glutamate decarboxylase 2

glutamate decarboxylase

glutamate decarboxylase 4

glutamate decarboxylase

glutamate decarboxylase-like

glutamate decarboxylase 5-like

glutamate decarboxylase

GAD protein

glutamate decarboxylase

glutamate decarboxylase 4

glutamate decarboxylase 1

glutamate decarboxylase 4

glutamate decarboxylase

glutamate decarboxylase 4

glutamate decarboxylase 1

glutamate decarboxylase isoform3

glutamate decarboxylase isoform2

glutamate decarboxylase

glutamate decarboxylase-like

glutamate decarboxylase

glutamate decarboxylase 4-like

glutamate decarboxylase-like

glutamate decarboxylase 4-like

glutamate decarboxylase

glutamate decarboxylase 1

glutamate decarboxylase 4

glutamate decarboxylase

uncharacterized LOC100191549

Pyridoxal phosphate (PLP)-dependent transferase superfamily protein

uncharacterized LOC100284551

glutamate decarboxylase

glutamate decarboxylase 1

glutamate decarboxylase

glutamate decarboxylase 1-like

glutamate decarboxylase-like

glutamate decarboxylase

glutamate decarboxylase-like

glutamate decarboxylase 1

glutamate decarboxylase

glutamate decarboxylase 1

glutamate decarboxylase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	7
bna00410	beta-Alanine metabolism	7
bna00430	Taurine and hypotaurine metabolism	7
bna00650	Butanoate metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	6
bna00650	Butanoate metabolism	6
bna00410	beta-Alanine metabolism	4
bna00430	Taurine and hypotaurine metabolism	4
bna00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	7
bna00410	beta-Alanine metabolism	7
bna00430	Taurine and hypotaurine metabolism	7
bna00650	Butanoate metabolism	7
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00410	beta-Alanine metabolism	3
bra00190	Oxidative phosphorylation	3
bra04145	Phagosome	3
bra00330	Arginine and proline metabolism	2
bra00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	2
ath00940	Phenylpropanoid biosynthesis	2
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00250	Alanine, aspartate and glutamate metabolism	6
ghi00410	beta-Alanine metabolism	6
ghi00430	Taurine and hypotaurine metabolism	6
ghi00650	Butanoate metabolism	6
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00250	Alanine, aspartate and glutamate metabolism	6
ghi00410	beta-Alanine metabolism	6
ghi00430	Taurine and hypotaurine metabolism	6
ghi00650	Butanoate metabolism	6
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00410	beta-Alanine metabolism	2
ghi00430	Taurine and hypotaurine metabolism	2
ghi00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04120	Ubiquitin mediated proteolysis	3
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	8
vvi01230	Biosynthesis of amino acids	7
vvi00010	Glycolysis / Gluconeogenesis	6
vvi00710	Carbon fixation by Calvin cycle	5
vvi00030	Pentose phosphate pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo01230	Biosynthesis of amino acids	6
ppo00010	Glycolysis / Gluconeogenesis	5
ppo00710	Carbon fixation by Calvin cycle	3
ppo00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	2
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00250	Alanine, aspartate and glutamate metabolism	2
mtr00410	beta-Alanine metabolism	2
mtr00430	Taurine and hypotaurine metabolism	2
mtr00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00250	Alanine, aspartate and glutamate metabolism	2
sot00410	beta-Alanine metabolism	2
sot00430	Taurine and hypotaurine metabolism	2
sot00650	Butanoate metabolism	2
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00250	Alanine, aspartate and glutamate metabolism	2
sot00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00250	Alanine, aspartate and glutamate metabolism	2
sot00410	beta-Alanine metabolism	2
sot00430	Taurine and hypotaurine metabolism	2
sot00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	4
nta00410	beta-Alanine metabolism	4
nta00430	Taurine and hypotaurine metabolism	4
nta00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00410	beta-Alanine metabolism	2
nta00430	Taurine and hypotaurine metabolism	2
nta00650	Butanoate metabolism	2
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	2
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00410	beta-Alanine metabolism	2
nta00430	Taurine and hypotaurine metabolism	2
nta00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2
zma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2
zma00650	Butanoate metabolism	2
zma00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2
zma00650	Butanoate metabolism	2
zma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00410	beta-Alanine metabolism	3
tae00430	Taurine and hypotaurine metabolism	3
tae00650	Butanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00430	Taurine and hypotaurine metabolism	10
tae00250	Alanine, aspartate and glutamate metabolism	7
tae00410	beta-Alanine metabolism	7
tae00650	Butanoate metabolism	7
tae00910	Nitrogen metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00410	beta-Alanine metabolism	3
tae00430	Taurine and hypotaurine metabolism	3
tae00650	Butanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00250	Alanine, aspartate and glutamate metabolism	4
sbi00410	beta-Alanine metabolism	4
sbi00430	Taurine and hypotaurine metabolism	4
sbi00650	Butanoate metabolism	4
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	5
sbi04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00250	Alanine, aspartate and glutamate metabolism	4
sbi00410	beta-Alanine metabolism	4
sbi00430	Taurine and hypotaurine metabolism	4
sbi00650	Butanoate metabolism	4
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00250	Alanine, aspartate and glutamate metabolism	4
bdi00410	beta-Alanine metabolism	4
bdi00430	Taurine and hypotaurine metabolism	4
bdi00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00250	Alanine, aspartate and glutamate metabolism	4
bdi00410	beta-Alanine metabolism	4
bdi00430	Taurine and hypotaurine metabolism	4
bdi00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04626	Plant-pathogen interaction	2
bdi00564	Glycerophospholipid metabolism	2
bdi00565	Ether lipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

111211020

106426880

106387720

103831077

831599

107918105

107948303

121224454

102612842

102611084

100796475

100796533

547724

100265999

100261008

100256481

7457832

7485189

25496687

120577330

11408278

100147723

100147722

544313

102594980

102581388

102581196

107804984

107819266

107797840

4333932

4335977

4335973

100191549

100273302

100284551

123066916

123082841

123075872

123447564

123441085

8065836

110437016

8063364

100831497

100831298

100827187

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	2	3	3	2	3	3	3	3	3	3	1	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125608998 (bna-r.1 coexpression data)

Top 50 enrichment test to 125608998 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**