ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7495842	uncharacterized LOC7495842
ppo-u.5	18107091	uncharacterized LOC18107091
ppo-u.5	18107093	uncharacterized LOC18107093
gma-u.5	102668076	myb-like protein X
gma-u.5	100787189	myb-like protein X
gma-u.5	100778584	myb-like protein X
mtr-u.5	11411351	DNA ligase 1
mtr-u.5	112419799	myb-like protein X
ath-u.5	AT5G48610	myb-like protein X
bra-r.6	103870683	DNA ligase 1
bra-r.6	103874971	TRAF3-interacting protein 1
bra-r.6	103849388	glutamic acid-rich protein
vvi-u.5	100250375	uncharacterized LOC100250375
vvi-u.5	100245554	uncharacterized LOC100245554
ghi-r.1	107939143	myb-like protein X
ghi-r.1	107943820	uncharacterized LOC107943820
ghi-r.1	107914738	glutamic acid-rich protein
bna-r.1	111206244	glutamic acid-rich protein-like
bna-r.1	125601819	TRAF3-interacting protein 1-like
bna-r.1	106348911	myb-like protein X
cit-r.1	102623498	uncharacterized LOC102623498
cit-r.1	102622758	uncharacterized LOC102622758
sly-u.5	101260029	uncharacterized LOC101260029
sly-u.5	101256675	uncharacterized LOC101256675
sot-r.1	102581845	myb-like protein X
sot-r.1	102602389	transcription initiation factor TFIID subunit 3-like
nta-r.1	107808026	uncharacterized LOC107808026
nta-r.1	107800463	uncharacterized LOC107800463
nta-r.1	107770135	uncharacterized LOC107770135
osa-u.5	107278708	uncharacterized LOC107278708
osa-u.5	4334775	uncharacterized LOC4334775
zma-u.5	103644324	glutamic acid-rich protein
zma-u.5	103627942	uncharacterized protein DDB_G0284459
tae-r.2	123156600	TRAF3-interacting protein 1
tae-r.2	123123790	serine/arginine repetitive matrix protein 1
tae-r.2	123087635	triadin
hvu-r.1	123395080	serine/arginine repetitive matrix protein 1-like
hvu-r.1	123407805	uncharacterized protein DDB_G0284459
sbi-r.1	8080156	myb-like protein X
sbi-r.1	8060968	uncharacterized LOC8060968
bdi-r.1	100822097	mediator of RNA polymerase II transcription subunit 1.1
bdi-r.1	100838614	zinc finger CCCH domain-containing protein 13

Top 50 coexpressed genes to 7495842 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7495842 (ppo-u.5 coexpression data)

CoexMap"127903902"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_024444958.2 [sequence] [blastp]
XP_024444959.2 [sequence] [blastp]
XP_024444960.2 [sequence] [blastp]
XP_024444961.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, plas 1, extr 1	(predict for XP_024444958.2)
nucl 9, plas 1, extr 1	(predict for XP_024444959.2)
nucl 8, cyto 1, plas 1, extr 1, cyto_plas 1	(predict for XP_024444960.2)
nucl 9, cyto 1, plas 1, cyto_plas 1	(predict for XP_024444961.2)

Subcellular
localization
TargetP

other 9, mito 4	(predict for XP_024444958.2)
other 9, mito 4	(predict for XP_024444959.2)
other 8	(predict for XP_024444960.2)
other 4, scret 3	(predict for XP_024444961.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7495842	ppo-u.5 for 18107091	ppo-u.5 for 18107093	gma-u.5 for 102668076	gma-u.5 for 100787189	gma-u.5 for 100778584	mtr-u.5 for 11411351	mtr-u.5 for 112419799	ath-u.5 for AT5G48610	bra-r.6 for 103870683	bra-r.6 for 103874971	bra-r.6 for 103849388	vvi-u.5 for 100250375	vvi-u.5 for 100245554	ghi-r.1 for 107939143	ghi-r.1 for 107943820	ghi-r.1 for 107914738	bna-r.1 for 111206244	bna-r.1 for 125601819	bna-r.1 for 106348911	cit-r.1 for 102623498	cit-r.1 for 102622758	sly-u.5 for 101260029	sly-u.5 for 101256675	sot-r.1 for 102581845	sot-r.1 for 102602389	nta-r.1 for 107808026	nta-r.1 for 107800463	nta-r.1 for 107770135	osa-u.5 for 107278708	osa-u.5 for 4334775	zma-u.5 for 103644324	zma-u.5 for 103627942	tae-r.2 for 123156600	tae-r.2 for 123123790	tae-r.2 for 123087635	hvu-r.1 for 123395080	hvu-r.1 for 123407805	sbi-r.1 for 8080156	sbi-r.1 for 8060968	bdi-r.1 for 100822097	bdi-r.1 for 100838614

Ortholog

Ortholog ID: 2508

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7495842

DEAD-box ATP-dependent RNA helicase 42

myb-like protein X

DNA ligase 1

myb-like protein X

TRAF3-interacting protein 1

glutamic acid-rich protein

myb-like protein X

uncharacterized LOC100250375

uncharacterized LOC100245554

myb-like protein X

DEAD-box ATP-dependent RNA helicase 42

glutamic acid-rich protein-like

TRAF3-interacting protein 1-like

myb-like protein X

uncharacterized LOC102623498

uncharacterized LOC102622758

uncharacterized LOC101260029

uncharacterized LOC101256675

myb-like protein X

transcription initiation factor TFIID subunit 3-like

uncharacterized LOC107808026

uncharacterized LOC107770135

uncharacterized LOC107808027

uncharacterized LOC107278708

uncharacterized LOC4334775

glutamic acid-rich protein

uncharacterized protein DDB_G0284459

triadin

zinc finger CCCH domain-containing protein 18

TRAF3-interacting protein 1

serine/arginine repetitive matrix protein 1-like

uncharacterized protein DDB_G0284459

myb-like protein X

uncharacterized LOC8060968

mediator of RNA polymerase II transcription subunit 1.1

zinc finger CCCH domain-containing protein 13

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04145	Phagosome	3
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

7495842

7495841

102668076

100778584

11411351

112419799

834918

103874971

103849388

103859209

100250375

100245554

107939143

107890498

107934478

111206244

125601819

106389014

102623498

102622758

101260029

101256675

102581845

102602389

107808026

107770135

107808027

107278708

4334775

103644324

103627942

123087635

123114300

123151642

123395080

123407805

8080156

8060968

100822097

100838614

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	1	3	2	3	3	2	2	2	3	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7495842 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7495842 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**