ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	112419799	myb-like protein X
mtr-r.5	112419799	myb-like protein X
mtr-u.5	11411351	DNA ligase 1
gma-u.5	102668076	myb-like protein X
gma-u.5	100787189	myb-like protein X
gma-u.5	100778584	myb-like protein X
ppo-u.5	7495841	DEAD-box ATP-dependent RNA helicase 42
ppo-u.5	7495842	uncharacterized LOC7495842
ath-u.5	AT5G48610	myb-like protein X
bra-r.6	103874971	TRAF3-interacting protein 1
bra-r.6	103870683	DNA ligase 1
bra-r.6	103859209	myb-like protein X
vvi-u.5	100245554	uncharacterized LOC100245554
vvi-u.5	100250375	uncharacterized LOC100250375
ghi-r.1	107915113	splicing regulatory glutamine/lysine-rich protein 1
ghi-r.1	107890498	myb-like protein X
ghi-r.1	107914738	glutamic acid-rich protein
bna-r.1	111206244	glutamic acid-rich protein-like
bna-r.1	125601819	TRAF3-interacting protein 1-like
bna-r.1	106348911	myb-like protein X
cit-r.1	102623498	uncharacterized LOC102623498
cit-r.1	102622758	uncharacterized LOC102622758
sly-u.5	101256675	uncharacterized LOC101256675
sly-u.5	101260029	uncharacterized LOC101260029
sot-r.1	102581845	myb-like protein X
sot-r.1	102602389	transcription initiation factor TFIID subunit 3-like
nta-r.1	107808026	uncharacterized LOC107808026
nta-r.1	107800463	uncharacterized LOC107800463
nta-r.1	107770135	uncharacterized LOC107770135
osa-u.5	4334775	uncharacterized LOC4334775
osa-u.5	107278708	uncharacterized LOC107278708
zma-u.5	103627942	uncharacterized protein DDB_G0284459
zma-u.5	103644324	glutamic acid-rich protein
tae-r.2	123087635	triadin
tae-r.2	123114300	zinc finger CCCH domain-containing protein 18
tae-r.2	123123790	serine/arginine repetitive matrix protein 1
hvu-r.1	123407805	uncharacterized protein DDB_G0284459
hvu-r.1	123395080	serine/arginine repetitive matrix protein 1-like
sbi-r.1	8080156	myb-like protein X
sbi-r.1	8060968	uncharacterized LOC8060968
bdi-r.1	100822097	mediator of RNA polymerase II transcription subunit 1.1
bdi-r.1	100838614	zinc finger CCCH domain-containing protein 13

Top 50 coexpressed genes to 112419799 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 112419799 (mtr-u.5 coexpression data)

CoexMap"112419799"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_024633485.2 [sequence] [blastp]
XP_039687509.1 [sequence] [blastp]
XP_039687510.1 [sequence] [blastp]
XP_039687511.1 [sequence] [blastp]
XP_039687512.1 [sequence] [blastp]
XP_039687513.1 [sequence] [blastp]
XP_039687514.1 [sequence] [blastp]
XP_039687515.1 [sequence] [blastp]
XP_039687516.1 [sequence] [blastp]
XP_039687517.1 [sequence] [blastp]
XP_039687518.1 [sequence] [blastp]
XP_039687519.1 [sequence] [blastp]
XP_039687520.1 [sequence] [blastp]
XP_039687521.1 [sequence] [blastp]
XP_039687522.1 [sequence] [blastp]
XP_039687523.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_024633485.2)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687509.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687510.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687511.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687512.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687513.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687514.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687515.1)
cyto 6, nucl 1, pero 1, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1	(predict for XP_039687516.1)
cyto 6, nucl 1, pero 1, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1	(predict for XP_039687517.1)
cyto 6, nucl 1, pero 1, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1	(predict for XP_039687518.1)
cyto 6, nucl 2, pero 1	(predict for XP_039687519.1)
cyto 5, nucl 2, pero 1, chlo 1, mito 1, chlo_mito 1	(predict for XP_039687520.1)
cyto 4, nucl 3, cyto_pero 3	(predict for XP_039687521.1)
cyto 4, nucl 3, cyto_pero 3	(predict for XP_039687522.1)
cyto 4, nucl 4, pero 1	(predict for XP_039687523.1)

Subcellular
localization
TargetP

other 8	(predict for XP_024633485.2)
other 8	(predict for XP_039687509.1)
other 8	(predict for XP_039687510.1)
other 8	(predict for XP_039687511.1)
other 8	(predict for XP_039687512.1)
other 8	(predict for XP_039687513.1)
other 8	(predict for XP_039687514.1)
other 8	(predict for XP_039687515.1)
other 8	(predict for XP_039687516.1)
other 8	(predict for XP_039687517.1)
other 8	(predict for XP_039687518.1)
other 8	(predict for XP_039687519.1)
other 8	(predict for XP_039687520.1)
other 8	(predict for XP_039687521.1)
other 8	(predict for XP_039687522.1)
other 8	(predict for XP_039687523.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 112419799	mtr-r.5 for 112419799	mtr-u.5 for 11411351	gma-u.5 for 102668076	gma-u.5 for 100787189	gma-u.5 for 100778584	ppo-u.5 for 7495841	ppo-u.5 for 7495842	ath-u.5 for AT5G48610	bra-r.6 for 103874971	bra-r.6 for 103870683	bra-r.6 for 103859209	vvi-u.5 for 100245554	vvi-u.5 for 100250375	ghi-r.1 for 107915113	ghi-r.1 for 107890498	ghi-r.1 for 107914738	bna-r.1 for 111206244	bna-r.1 for 125601819	bna-r.1 for 106348911	cit-r.1 for 102623498	cit-r.1 for 102622758	sly-u.5 for 101256675	sly-u.5 for 101260029	sot-r.1 for 102581845	sot-r.1 for 102602389	nta-r.1 for 107808026	nta-r.1 for 107800463	nta-r.1 for 107770135	osa-u.5 for 4334775	osa-u.5 for 107278708	zma-u.5 for 103627942	zma-u.5 for 103644324	tae-r.2 for 123087635	tae-r.2 for 123114300	tae-r.2 for 123123790	hvu-r.1 for 123407805	hvu-r.1 for 123395080	sbi-r.1 for 8080156	sbi-r.1 for 8060968	bdi-r.1 for 100822097	bdi-r.1 for 100838614

Ortholog

Ortholog ID: 2508

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

myb-like protein X

DNA ligase 1

myb-like protein X

DEAD-box ATP-dependent RNA helicase 42

uncharacterized LOC7495842

myb-like protein X

TRAF3-interacting protein 1

myb-like protein X

glutamic acid-rich protein

uncharacterized LOC100245554

uncharacterized LOC100250375

myb-like protein X

DEAD-box ATP-dependent RNA helicase 42

myb-like protein X

glutamic acid-rich protein-like

TRAF3-interacting protein 1-like

myb-like protein X

uncharacterized LOC102623498

uncharacterized LOC102622758

uncharacterized LOC101256675

uncharacterized LOC101260029

myb-like protein X

transcription initiation factor TFIID subunit 3-like

uncharacterized LOC107808026

uncharacterized LOC107770135

uncharacterized LOC107808027

uncharacterized LOC4334775

uncharacterized LOC107278708

uncharacterized protein DDB_G0284459

glutamic acid-rich protein

triadin

zinc finger CCCH domain-containing protein 18

TRAF3-interacting protein 1

uncharacterized protein DDB_G0284459

serine/arginine repetitive matrix protein 1-like

myb-like protein X

uncharacterized LOC8060968

mediator of RNA polymerase II transcription subunit 1.1

zinc finger CCCH domain-containing protein 13

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04145	Phagosome	3
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

112419799

11411351

102668076

100778584

7495841

7495842

834918

103874971

103859209

103849388

100245554

100250375

107890498

107934478

107939143

111206244

125601819

106389014

102623498

102622758

101256675

101260029

102581845

102602389

107808026

107770135

107808027

4334775

107278708

103627942

103644324

123087635

123114300

123151642

123407805

123395080

8080156

8060968

100822097

100838614

The preparation time of this page was 0.4 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	1	3	2	3	3	2	2	2	3	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 112419799 (mtr-u.5 coexpression data)

Top 50 enrichment test to 112419799 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**