ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	18095239	U3 small nucleolar RNA-associated protein 20
ppo-r.4	18095239	U3 small nucleolar RNA-associated protein 20
gma-u.5	100811612	small subunit processome component 20 homolog
mtr-u.5	11443043	small subunit processome component 20 homolog
ath-u.5	AT4G30990	ARM repeat superfamily protein
bra-r.6	103862024	U3 small nucleolar RNA-associated protein 20
bra-r.6	103840668	small subunit processome component 20 homolog
vvi-u.5	100255444	uncharacterized LOC100255444
ghi-r.1	107915526	small subunit processome component 20 homolog
ghi-r.1	107914742	small subunit processome component 20 homolog
bna-r.1	106410570	U3 small nucleolar RNA-associated protein 20
bna-r.1	106452786	U3 small nucleolar RNA-associated protein 20-like
cit-r.1	102625218	uncharacterized LOC102625218
sly-u.5	101248519	uncharacterized LOC101248519
sot-r.1	102578596	U3 small nucleolar RNA-associated protein 20-like
sot-r.1	102606367	uncharacterized LOC102606367
nta-r.1	107826465	uncharacterized LOC107826465
nta-r.1	142168673	uncharacterized LOC142168673
osa-u.5	107279412	uncharacterized LOC107279412
zma-u.5	103652517	uncharacterized LOC103652517
zma-u.5	103649658	small subunit processome component 20 homolog
tae-r.2	123078466	small subunit processome component 20 homolog
tae-r.2	123069997	U3 small nucleolar RNA-associated protein 20
tae-r.2	123061359	small subunit processome component 20 homolog
hvu-r.1	123443772	small subunit processome component 20 homolog
sbi-r.1	8078224	small subunit processome component 20 homolog
bdi-r.1	100825719	small subunit processome component 20 homolog
cre-r.1	CHLRE_10g461000v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0030686 [list] [network] 90S preribosome	(48 genes)	IEA
GO:0032040 [list] [network] small-subunit processome	(53 genes)	IEA
GO:0005730 [list] [network] nucleolus	(220 genes)	IEA

GO MF

Protein

XP_024444840.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, mito 1, cyto_mito 1

(predict for XP_024444840.2)

Subcellular
localization
TargetP

mito 4

(predict for XP_024444840.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18095239	ppo-r.4 for 18095239	gma-u.5 for 100811612	mtr-u.5 for 11443043	ath-u.5 for AT4G30990	bra-r.6 for 103862024	bra-r.6 for 103840668	vvi-u.5 for 100255444	ghi-r.1 for 107915526	ghi-r.1 for 107914742	bna-r.1 for 106410570	bna-r.1 for 106452786	cit-r.1 for 102625218	sly-u.5 for 101248519	sot-r.1 for 102578596	sot-r.1 for 102606367	nta-r.1 for 107826465	nta-r.1 for 142168673	osa-u.5 for 107279412	zma-u.5 for 103652517	zma-u.5 for 103649658	tae-r.2 for 123078466	tae-r.2 for 123069997	tae-r.2 for 123061359	hvu-r.1 for 123443772	sbi-r.1 for 8078224	bdi-r.1 for 100825719	cre-r.1 for CHLRE_10g461000v5

Ortholog

Ortholog ID: 7300

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

U3 small nucleolar RNA-associated protein 20

small subunit processome component 20 homolog

ARM repeat superfamily protein

U3 small nucleolar RNA-associated protein 20

small subunit processome component 20 homolog

uncharacterized LOC100255444

small subunit processome component 20 homolog

U3 small nucleolar RNA-associated protein 20

U3 small nucleolar RNA-associated protein 20-like

uncharacterized LOC102625218

uncharacterized LOC101248519

uncharacterized LOC102606367

uncharacterized LOC102593142

uncharacterized LOC107826465

uncharacterized LOC142168673

uncharacterized LOC107279412

uncharacterized LOC103652517

small subunit processome component 20 homolog

U3 small nucleolar RNA-associated protein 20

small subunit processome component 20 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03030	DNA replication	3
nta03410	Base excision repair	3
nta03420	Nucleotide excision repair	3
nta03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03015	mRNA surveillance pathway	2
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03020	RNA polymerase	4
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03020	RNA polymerase	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

18095239

100811612

11443043

829224

103862024

103840668

100255444

107915526

107914742

106410570

106452786

102625218

101248519

102606367

102593142

107826465

142168673

107279412

103652517

103649658

123078466

123069997

123061359

123443772

8078224

100825719

5724153

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18095239 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095239 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	1	2	1	2	2	1	1	2	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18095239 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095239 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**