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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18109089   transcription termination factor MTEF1, chloroplastic 
 ppo-r.4   18109089   transcription termination factor MTEF1, chloroplastic 
 ppo-u.5   18101448   transcription termination factor MTEF1, chloroplastic 
 ppo-u.5   7497062   transcription termination factor MTEF1, chloroplastic 
 ppo-u.5   7481579   transcription termination factor MTEF1, chloroplastic 
 gma-u.5   100804440   transcription termination factor MTEF1, chloroplastic 
 gma-u.5   100801948   transcription termination factor MTEF1, chloroplastic 
 gma-u.5   100794678   transcription termination factor MTEF1, chloroplastic 
 mtr-u.5   25486960   transcription termination factor MTEF1, chloroplastic 
 mtr-u.5   11415133   transcription termination factor MTEF1, chloroplastic 
 mtr-u.5   11422152   transcription termination factor MTEF1, chloroplastic 
 ath-u.5   EMB93   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT2G34620   Mitochondrial transcription termination factor family protein 
 ath-u.5   EMB3114   Mitochondrial transcription termination factor family protein 
 bra-r.6   103865507   transcription termination factor MTEF1, chloroplastic 
 bra-r.6   103875451   transcription termination factor MTEF1, chloroplastic 
 vvi-u.5   100853685   transcription termination factor MTEF1, chloroplastic 
 vvi-u.5   100247222   transcription termination factor MTEF1, chloroplastic 
 vvi-u.5   100254596   transcription termination factor MTEF1, chloroplastic 
 ghi-r.1   107920375   transcription termination factor MTEF1, chloroplastic 
 ghi-r.1   107937513   transcription termination factor MTEF1, chloroplastic 
 bna-r.1   106436787   transcription termination factor MTEF1, chloroplastic-like 
 bna-r.1   106391445   transcription termination factor MTEF1, chloroplastic 
 bna-r.1   106396429   transcription termination factor MTEF1, chloroplastic 
 cit-r.1   102624544   transcription termination factor MTEF1, chloroplastic 
 cit-r.1   102618922   transcription termination factor MTEF1, chloroplastic 
 cit-r.1   102611895   transcription termination factor MTEF1, chloroplastic 
 sly-u.5   112941526   transcription termination factor MTEF1, chloroplastic 
 sly-u.5   101259687   transcription termination factor MTEF1, chloroplastic 
 sly-u.5   101255820   protein SEEDLING LETHAL 1, chloroplastic 
 sot-r.1   102604575   uncharacterized LOC102604575 
 sot-r.1   102605440   uncharacterized LOC102605440 
 sot-r.1   102584074   uncharacterized LOC102584074 
 nta-r.1   107780477   transcription termination factor MTEF1, chloroplastic 
 nta-r.1   107781555   transcription termination factor MTEF1, chloroplastic 
 osa-u.5   4329761   transcription termination factor MTEF1, chloroplastic 
 osa-u.5   4332887   protein SEEDLING LETHAL 1, chloroplastic 
 zma-u.5   100284573   mTERF-like protein 
 zma-u.5   100273894   uncharacterized LOC100273894 
 zma-u.5   103635234   uncharacterized LOC103635234 
 tae-r.2   123190757   transcription termination factor MTEF1, chloroplastic 
 tae-r.2   123092010   transcription termination factor MTEF1, chloroplastic 
 hvu-r.1   123452572   transcription termination factor MTEF1, chloroplastic-like 
 hvu-r.1   123446467   transcription termination factor MTEF1, chloroplastic-like 
 hvu-r.1   123404150   transcription termination factor MTEF1, chloroplastic-like 
 sbi-r.1   8080796   transcription termination factor MTEF1, chloroplastic 
 sbi-r.1   110432040   transcription termination factor MTEF1, chloroplastic 
 sbi-r.1   8070549   transcription termination factor MTEF1, chloroplastic 
 bdi-r.1   100838407   transcription termination factor MTEF1, chloroplastic 
 bdi-r.1   100829532   transcription termination factor MTEF1, chloroplastic 
 bdi-r.1   100822472   transcription termination factor MTEF1, chloroplastic 
 cre-r.1   CHLRE_12g542500v5   uncharacterized protein 

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Top 50 coexpressed genes to 18109089 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18109089 (ppo-u.5 coexpression data)

CoexMap"18109089"


ppoLOC18109089 | Entrez gene ID : 18109089    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 3 3 3 2 3 2 3 3 3 3 2 2 3 2 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (569 genes)  IEA  
Protein XP_052309609.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  mito 1  (predict for XP_052309609.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_052309609.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18109089
ppo-r.4
for
18109089
ppo-u.5
for
18101448
ppo-u.5
for
7497062
ppo-u.5
for
7481579
gma-u.5
for
100804440
gma-u.5
for
100801948
gma-u.5
for
100794678
mtr-u.5
for
25486960
mtr-u.5
for
11415133
mtr-u.5
for
11422152
ath-u.5
for
EMB93
ath-u.5
for
AT2G34620
ath-u.5
for
EMB3114
bra-r.6
for
103865507
bra-r.6
for
103875451
vvi-u.5
for
100853685
vvi-u.5
for
100247222
vvi-u.5
for
100254596
ghi-r.1
for
107920375
ghi-r.1
for
107937513
bna-r.1
for
106436787
bna-r.1
for
106391445
bna-r.1
for
106396429
cit-r.1
for
102624544
cit-r.1
for
102618922
cit-r.1
for
102611895
sly-u.5
for
112941526
sly-u.5
for
101259687
sly-u.5
for
101255820
sot-r.1
for
102604575
sot-r.1
for
102605440
sot-r.1
for
102584074
nta-r.1
for
107780477
nta-r.1
for
107781555
osa-u.5
for
4329761
osa-u.5
for
4332887
zma-u.5
for
100284573
zma-u.5
for
100273894
zma-u.5
for
103635234
tae-r.2
for
123190757
tae-r.2
for
123092010
hvu-r.1
for
123452572
hvu-r.1
for
123446467
hvu-r.1
for
123404150
sbi-r.1
for
8080796
sbi-r.1
for
110432040
sbi-r.1
for
8070549
bdi-r.1
for
100838407
bdi-r.1
for
100829532
bdi-r.1
for
100822472
cre-r.1
for
CHLRE_12g542500v5


Ortholog ID: 1479
Species ppo ppo gma gma gma mtr mtr mtr ath ath ath bra bra vvi vvi vvi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC18109089 LOC7497062 LOC100804440 LOC100794678 LOC100785219 LOC25486960 LOC11415133 LOC11422152 EMB93 AT2G34620 EMB3114 LOC103865507 LOC103875451 LOC100853685 LOC100247222 LOC100254596 LOC107960139 LOC106396429 LOC106447488 LOC106369326 LOC102624544 LOC102618922 LOC102611895 LOC112941526 LOC101259687 LOC101255820 LOC102584074 LOC102603805 LOC102604317 LOC107780477 LOC107761928 LOC4329761 LOC4332887 LOC100284573 LOC100273894 LOC103635234 LOC123092010 LOC123105312 LOC123452572 LOC123446467 LOC123404150 LOC8080796 LOC110432040 LOC8070549 LOC100838407 LOC100829532 LOC100822472 CHLRE_12g542500v5
Function* transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic mTERF domain-containing protein transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic Mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor family protein transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic uncharacterized LOC106447488 transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic protein SEEDLING LETHAL 1, chloroplastic uncharacterized LOC102584074 uncharacterized LOC102603805 uncharacterized LOC102604317 transcription termination factor MTEF1, chloroplastic protein SEEDLING LETHAL 1, chloroplastic-like transcription termination factor MTEF1, chloroplastic protein SEEDLING LETHAL 1, chloroplastic mTERF-like protein uncharacterized LOC100273894 uncharacterized LOC103635234 transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic-like transcription termination factor MTEF1, chloroplastic-like transcription termination factor MTEF1, chloroplastic-like transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic transcription termination factor MTEF1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 13
vvi00196 Photosynthesis - antenna proteins 5
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 12
sly00860 Porphyrin metabolism 5
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta00480 Glutathione metabolism 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 9
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00906 Carotenoid biosynthesis 3
tae00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 4
hvu00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 5
sbi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 4
bdi00860 Porphyrin metabolism 3
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18109089 7497062 100804440 100794678 100785219 25486960 11415133 11422152 814834 818027 818173 103865507 103875451 100853685 100247222 100254596 107960139 106396429 106447488 106369326 102624544 102618922 102611895 112941526 101259687 101255820 102584074 102603805 102604317 107780477 107761928 4329761 4332887 100284573 100273894 103635234 123092010 123105312 123452572 123446467 123404150 8080796 110432040 8070549 100838407 100829532 100822472 5719523
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