ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25495082	sphingoid long-chain bases kinase 1
mtr-r.5	25495082	sphingoid long-chain bases kinase 1
gma-u.5	100788629	sphingoid long-chain bases kinase 1
gma-u.5	100800104	sphingoid long-chain bases kinase 1
ppo-u.5	7454301	sphingoid long-chain bases kinase 1
ppo-u.5	7455507	sphingoid long-chain bases kinase 1
ath-u.5	LCBK1	long-chain base (LCB) kinase 1
vvi-u.5	100245435	sphingoid long-chain bases kinase 1
sly-u.5	101267846	sphingoid long-chain bases kinase 1
osa-u.5	4349120	sphingoid long-chain bases kinase 1
osa-u.5	4336541	sphingoid long-chain bases kinase 1
zma-u.5	103643367	sphingoid long-chain bases kinase 1
zma-u.5	100192564	uncharacterized LOC100192564
zma-u.5	103654350	sphingoid long-chain bases kinase 1

Annotation

functional annotation

KEGG

GO BP

GO:0006672 [list] [network] ceramide metabolic process	(28 genes)	IEA
GO:0016310 [list] [network] phosphorylation	(1474 genes)	IEA

GO CC

GO MF

GO:0001729 [list] [network] ceramide kinase activity

(2 genes)

IEA

Protein

XP_013450696.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, chlo_mito 4, nucl 1, mito 1

(predict for XP_013450696.1)

Subcellular
localization
TargetP

chlo 9, mito 5

(predict for XP_013450696.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25495082	mtr-r.5 for 25495082	gma-u.5 for 100788629	gma-u.5 for 100800104	ppo-u.5 for 7454301	ppo-u.5 for 7455507	ath-u.5 for LCBK1	vvi-u.5 for 100245435	sly-u.5 for 101267846	osa-u.5 for 4349120	osa-u.5 for 4336541	zma-u.5 for 103643367	zma-u.5 for 100192564	zma-u.5 for 103654350

Ortholog

Ortholog ID: 4975

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LCBK1

Function^*

sphingoid long-chain bases kinase 1

long-chain base (LCB) kinase 1

sphingoid long-chain bases kinase 1

uncharacterized LOC100192564

sphingoid long-chain bases kinase 1

sphingoid long-chain bases kinase 1-like

sphingoid long-chain bases kinase 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	4
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2
bra00561	Glycerolipid metabolism	2
bra00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	3
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi04144	Endocytosis	2
sbi05100	Bacterial invasion of epithelial cells	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	3
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	4

Expression

Expression pattern

Entrez Gene ID^*

25495082

100800104

100788629

7455507

7454301

832411

103854897

103874220

100245435

107940988

107949220

106348330

125597791

102609345

101267846

102585935

107775511

107822472

4336541

4349120

100192564

103654350

123181336

123124510

123427386

123434623

8055928

8065695

100825372

100840129

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25495082 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25495082 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	2	1	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25495082 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25495082 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**