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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LCBK1   long-chain base (LCB) kinase 1 
 ath-r.7   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.9   LCBK1   long-chain base (LCB) kinase 1 
 ath-e.2   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.4.bio   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.4.hor   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.4.lig   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.4.str   LCBK1   long-chain base (LCB) kinase 1 
 ath-m.4.tis   LCBK1   long-chain base (LCB) kinase 1 
 bra-r.6   103854897   sphingoid long-chain bases kinase 1 
 bra-r.6   103874220   sphingoid long-chain bases kinase 1 
 bna-r.1   125582019   sphingoid long-chain bases kinase 1 
 bna-r.1   125597791   sphingoid long-chain bases kinase 1 
 bna-r.1   106348330   sphingoid long-chain bases kinase 1 
 ghi-r.1   107949220   sphingoid long-chain bases kinase 1 
 ghi-r.1   107940988   sphingoid long-chain bases kinase 1 
 ghi-r.1   107929797   sphingoid long-chain bases kinase 1 
 cit-r.1   102609345   sphingoid long-chain bases kinase 1 
 gma-u.5   100788629   sphingoid long-chain bases kinase 1 
 gma-u.5   100800104   sphingoid long-chain bases kinase 1 
 vvi-u.5   100245435   sphingoid long-chain bases kinase 1 
 ppo-u.5   7454301   sphingoid long-chain bases kinase 1 
 ppo-u.5   7455507   sphingoid long-chain bases kinase 1 
 mtr-u.5   25495082   sphingoid long-chain bases kinase 1 
 sly-u.5   101267846   sphingoid long-chain bases kinase 1 
 sot-r.1   102585935   sphingoid long-chain bases kinase 1 
 nta-r.1   107775511   sphingoid long-chain bases kinase 1 
 nta-r.1   107822472   sphingoid long-chain bases kinase 1 
 osa-u.5   4336541   sphingoid long-chain bases kinase 1 
 osa-u.5   4349120   sphingoid long-chain bases kinase 1 
 zma-u.5   103654350   sphingoid long-chain bases kinase 1 
 zma-u.5   100192564   uncharacterized LOC100192564 
 zma-u.5   103643367   sphingoid long-chain bases kinase 1 
 tae-r.2   123046177   sphingoid long-chain bases kinase 1 
 tae-r.2   123048803   sphingoid long-chain bases kinase 1 
 tae-r.2   123054057   sphingoid long-chain bases kinase 1 
 hvu-r.1   123427386   sphingoid long-chain bases kinase 1-like 
 hvu-r.1   123434623   sphingoid long-chain bases kinase 1-like 
 sbi-r.1   8055928   sphingoid long-chain bases kinase 1 
 sbi-r.1   8065695   sphingoid long-chain bases kinase 1 
 bdi-r.1   100840129   sphingoid long-chain bases kinase 1 
 bdi-r.1   100825372   sphingoid long-chain bases kinase 1 

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Top 50 coexpressed genes to LCBK1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LCBK1 (ath-u.5 coexpression data)

CoexMap"832411"


athLCBK1 | Entrez gene ID : 832411      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 1 1 2 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030148 [list] [network] sphingolipid biosynthetic process  (23 genes)  IDA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0008481 [list] [network] sphingosine kinase activity  (4 genes)  IDA  
Protein NP_001031929.4 [sequence] [blastp]
NP_001331260.1 [sequence] [blastp]
NP_001331261.1 [sequence] [blastp]
NP_568432.1 [sequence] [blastp]
NP_851065.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_001031929.4)
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_001331260.1)
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_001331261.1)
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_568432.1)
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_851065.1)
Subcellular
localization
TargetP
chlo 6,  mito 3  (predict for NP_001031929.4)
chlo 6,  mito 3  (predict for NP_001331260.1)
chlo 6,  mito 3  (predict for NP_001331261.1)
chlo 6,  mito 3  (predict for NP_568432.1)
chlo 6,  mito 3  (predict for NP_851065.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LCBK1
ath-r.7
for
LCBK1
ath-m.9
for
LCBK1
ath-e.2
for
LCBK1
ath-m.4.bio
for
LCBK1
ath-m.4.hor
for
LCBK1
ath-m.4.lig
for
LCBK1
ath-m.4.str
for
LCBK1
ath-m.4.tis
for
LCBK1
bra-r.6
for
103854897
bra-r.6
for
103874220
bna-r.1
for
125582019
bna-r.1
for
125597791
bna-r.1
for
106348330
ghi-r.1
for
107949220
ghi-r.1
for
107940988
ghi-r.1
for
107929797
cit-r.1
for
102609345
gma-u.5
for
100788629
gma-u.5
for
100800104
vvi-u.5
for
100245435
ppo-u.5
for
7454301
ppo-u.5
for
7455507
mtr-u.5
for
25495082
sly-u.5
for
101267846
sot-r.1
for
102585935
nta-r.1
for
107775511
nta-r.1
for
107822472
osa-u.5
for
4336541
osa-u.5
for
4349120
zma-u.5
for
103654350
zma-u.5
for
100192564
zma-u.5
for
103643367
tae-r.2
for
123046177
tae-r.2
for
123048803
tae-r.2
for
123054057
hvu-r.1
for
123427386
hvu-r.1
for
123434623
sbi-r.1
for
8055928
sbi-r.1
for
8065695
bdi-r.1
for
100840129
bdi-r.1
for
100825372


Ortholog ID: 4975
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LCBK1 LOC103854897 LOC103874220 LOC125597791 LOC106348330 LOC106382725 LOC107949220 LOC107940988 LOC107920043 LOC102609345 LOC100788629 LOC100800104 LOC100245435 LOC7454301 LOC7455507 LOC25495082 LOC101267846 LOC102585935 LOC107775511 LOC107822472 LOC4336541 LOC4349120 LOC103654350 LOC100192564 LOC103643367 LOC123046177 LOC123124510 LOC123181336 LOC123427386 LOC123434623 LOC8055928 LOC8065695 LOC100840129 LOC100825372
Function* long-chain base (LCB) kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 uncharacterized LOC100192564 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1-like sphingoid long-chain bases kinase 1-like sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1 sphingoid long-chain bases kinase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra04382 Cornified envelope formation 2
bra00561 Glycerolipid metabolism 2
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 3
bra04141 Protein processing in endoplasmic reticulum 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 4
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 2
sbi04144 Endocytosis 2
sbi05100 Bacterial invasion of epithelial cells 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832411 103854897 103874220 125597791 106348330 106382725 107949220 107940988 107920043 102609345 100788629 100800104 100245435 7454301 7455507 25495082 101267846 102585935 107775511 107822472 4336541 4349120 103654350 100192564 103643367 123046177 123124510 123181336 123427386 123434623 8055928 8065695 100840129 100825372
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