ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25500626	RNA-binding protein 38
mtr-r.5	25500626	RNA-binding protein 38
gma-u.5	100788899	RNA-binding protein 24
gma-u.5	100786208	RNA-binding protein 24-B
ppo-u.5	7478798	uncharacterized LOC7478798
ppo-u.5	7455359	uncharacterized LOC7455359
ath-u.5	AT2G46780	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103866433	probable RNA-binding protein ARP1
bra-r.6	103866305	probable RNA-binding protein ARP1
vvi-u.5	100257521	uncharacterized LOC100257521
vvi-u.5	104882246	uncharacterized LOC104882246
ghi-r.1	107954420	RNA-binding protein 38
ghi-r.1	107953004	RNA-binding protein 24-B
ghi-r.1	107923693	RNA-binding protein 38
bna-r.1	106450476	probable RNA-binding protein ARP1
bna-r.1	106412218	probable RNA-binding protein ARP1
bna-r.1	106391974	probable RNA-binding protein ARP1
cit-r.1	102620234	uncharacterized LOC102620234

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_013444556.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for XP_013444556.1)

Subcellular
localization
TargetP

other 7, mito 3

(predict for XP_013444556.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25500626	mtr-r.5 for 25500626	gma-u.5 for 100788899	gma-u.5 for 100786208	ppo-u.5 for 7478798	ppo-u.5 for 7455359	ath-u.5 for AT2G46780	bra-r.6 for 103866433	bra-r.6 for 103866305	vvi-u.5 for 100257521	vvi-u.5 for 104882246	ghi-r.1 for 107954420	ghi-r.1 for 107953004	ghi-r.1 for 107923693	bna-r.1 for 106450476	bna-r.1 for 106412218	bna-r.1 for 106391974	cit-r.1 for 102620234

Ortholog

Ortholog ID: 11949

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

Symbol

Function^*

RNA-binding protein 38

RNA-binding protein 24-B

uncharacterized LOC7478798

uncharacterized LOC7455359

RNA-binding (RRM/RBD/RNP motifs) family protein

probable RNA-binding protein ARP1

uncharacterized LOC100257521

uncharacterized LOC104882246

RNA-binding protein 24-B

RNA-binding protein 38

probable RNA-binding protein ARP1

uncharacterized LOC102620234

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	3
vvi00061	Fatty acid biosynthesis	2
vvi00780	Biotin metabolism	2
vvi01212	Fatty acid metabolism	2
vvi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03030	DNA replication	5

Expression

Expression pattern

Entrez Gene ID^*

25500626

100786208

7478798

7455359

819291

103866433

103866305

100257521

104882246

107953004

107923693

107911274

106450476

106391974

125574983

102620234


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	osa	nta	bdi	sot	tae	sly	zma	sbi	hvu	cre
Paralog	2	2	2	1	2	2	3	3	1	0	0	0	0	0	0	0	0	0	0

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25500626 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25500626 (mtr-u.5 coexpression data)

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25500626 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25500626 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**