ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25502029	probable DEAD-box ATP-dependent RNA helicase 48
mtr-r.5	25502029	probable DEAD-box ATP-dependent RNA helicase 48
gma-u.5	100808520	probable DEAD-box ATP-dependent RNA helicase 48
gma-u.5	100781898	probable DEAD-box ATP-dependent RNA helicase 48
ppo-u.5	7478057	probable DEAD-box ATP-dependent RNA helicase 48
ppo-u.5	7458158	probable DEAD-box ATP-dependent RNA helicase 48
ath-u.5	AT1G63250	DEA(D/H)-box RNA helicase family protein
vvi-u.5	100254793	probable DEAD-box ATP-dependent RNA helicase 48
sly-u.5	101259722	probable DEAD-box ATP-dependent RNA helicase 48
osa-u.5	4331214	DEAD-box ATP-dependent RNA helicase 48-like
zma-u.5	103627905	DEAD-box ATP-dependent RNA helicase 48

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003724 [list] [network] RNA helicase activity	(72 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2502 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4267 genes)	IEA

Protein

XP_013447008.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 2

(predict for XP_013447008.1)

Subcellular
localization
TargetP

mito 9

(predict for XP_013447008.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25502029	mtr-r.5 for 25502029	gma-u.5 for 100808520	gma-u.5 for 100781898	ppo-u.5 for 7478057	ppo-u.5 for 7458158	ath-u.5 for AT1G63250	vvi-u.5 for 100254793	sly-u.5 for 101259722	osa-u.5 for 4331214	zma-u.5 for 103627905

Ortholog ID: 9382

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable DEAD-box ATP-dependent RNA helicase 48

DEA(D/H)-box RNA helicase family protein

probable DEAD-box ATP-dependent RNA helicase 48

putative DEAD-box ATP-dependent RNA helicase 48

DEAD-box ATP-dependent RNA helicase 48-like

DEAD-box ATP-dependent RNA helicase 48

DEAD-box ATP-dependent RNA helicase 48-like

DEAD-box ATP-dependent RNA helicase 48

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	3
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00020	Citrate cycle (TCA cycle)	2
tae00630	Glyoxylate and dicarboxylate metabolism	2
tae01200	Carbon metabolism	2
tae01210	2-Oxocarboxylic acid metabolism	2
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi00510	N-Glycan biosynthesis	2
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

25502029

100808520

100781898

7478057

7458158

842631

103838078

100254793

107947009

107936423

106358552

106366519

102624311

101259722

102602129

107774058

107790752

4331214

103627905

123129118

123146284

123406320

8084443

100821408

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25502029 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25502029 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	2	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25502029 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25502029 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**