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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PQL3   PsbQ-like 3 
 ath-r.7   PQL3   PsbQ-like 3 
 ath-e.2   PQL3   PsbQ-like 3 
 bra-r.6   103852321   psbQ-like protein 3, chloroplastic 
 ghi-r.1   121219361   psbQ-like protein 3, chloroplastic 
 ghi-r.1   107936801   psbQ-like protein 3, chloroplastic 
 cit-r.1   102620573   psbQ-like protein 3, chloroplastic 
 gma-u.5   100811804   psbQ-like protein 3, chloroplastic 
 gma-u.5   100784902   oxygen-evolving enhancer protein 3-1, chloroplastic-like 
 vvi-u.5   100248901   psbQ-like protein 3, chloroplastic 
 ppo-u.5   18106638   psbQ-like protein 3, chloroplastic 
 mtr-u.5   11406097   psbQ-like protein 3, chloroplastic 
 sly-u.5   104646595   psbQ-like protein 3, chloroplastic 
 nta-r.1   107831983   psbQ-like protein 3, chloroplastic 
 nta-r.1   107775253   psbQ-like protein 3, chloroplastic 
 osa-u.5   4336434   psbQ-like protein 3, chloroplastic 
 zma-u.5   103646199   psbQ-like protein 3, chloroplastic 
 hvu-r.1   123427273   psbQ-like protein 3, chloroplastic 
 sbi-r.1   8082843   psbQ-like protein 3, chloroplastic 
 bdi-r.1   100824557   psbQ-like protein 3, chloroplastic 

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Top 50 coexpressed genes to PQL3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PQL3 (ath-u.5 coexpression data)

CoexMap"3768499"


athPQL3 | Entrez gene ID : 3768499      
Species ath bra ghi cit gma vvi ppo mtr sly nta osa zma hvu sbi bdi tae bna cre sot
Paralog 3 1 2 1 2 1 1 1 1 2 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009767 [list] [network] photosynthetic electron transport chain  (35 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0009055 [list] [network] electron transfer activity  (81 genes)  IMP  
Protein NP_001030947.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  cyto_nucl 2,  mito 1,  extr 1,  vacu 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001030947.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for NP_001030947.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PQL3
ath-r.7
for
PQL3
ath-e.2
for
PQL3
bra-r.6
for
103852321
ghi-r.1
for
121219361
ghi-r.1
for
107936801
cit-r.1
for
102620573
gma-u.5
for
100811804
gma-u.5
for
100784902
vvi-u.5
for
100248901
ppo-u.5
for
18106638
mtr-u.5
for
11406097
sly-u.5
for
104646595
nta-r.1
for
107831983
nta-r.1
for
107775253
osa-u.5
for
4336434
zma-u.5
for
103646199
hvu-r.1
for
123427273
sbi-r.1
for
8082843
bdi-r.1
for
100824557


Ortholog ID: 11149
Species ath bra ghi ghi cit gma gma vvi ppo mtr sly nta nta osa zma hvu sbi bdi
Symbol PQL3 LOC103852321 LOC121219361 LOC107936801 LOC102620573 LOC100811804 LOC100784902 LOC100248901 LOC18106638 LOC11406097 LOC104646595 LOC107831983 LOC107775253 LOC4336434 LOC103646199 LOC123427273 LOC8082843 LOC100824557
Function* PsbQ-like 3 psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic oxygen-evolving enhancer protein 3-1, chloroplastic-like psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic psbQ-like protein 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
ppo01230 Biosynthesis of amino acids 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr04146 Peroxisome 2
mtr03010 Ribosome 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00260 Glycine, serine and threonine metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
nta00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00710 Carbon fixation by Calvin cycle 3
hvu01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 3768499 103852321 121219361 107936801 102620573 100811804 100784902 100248901 18106638 11406097 104646595 107831983 107775253 4336434 103646199 123427273 8082843 100824557
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