ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4325450	cyclin-L1-1-like
osa-r.6	4325450	cyclin-L1-1-like
osa-m.8	4325450	cyclin-L1-1-like
osa-e.1	4325450	cyclin-L1-1-like
zma-u.5	100283163	uncharacterized LOC100283163
zma-u.5	100382239	uncharacterized LOC100382239
ath-u.5	RCY1	arginine-rich cyclin 1
gma-u.5	100820383	cyclin-L1-1-like
gma-u.5	100815690	cyclin-L1-1
sly-u.5	101252821	cyclin-L1-1
vvi-u.5	100241975	cyclin-L1-1
vvi-u.5	104878662	cyclin-L1-1-like
vvi-u.5	104880255	uncharacterized LOC104880255
ppo-u.5	7457885	cyclin-L1-1
mtr-u.5	11430123	cyclin-L1-1
mtr-u.5	11420517	cyclin-L1-1

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(380 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity

(56 genes)

IEA

Protein

NP_001388764.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001388764.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001388764.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4325450	osa-r.6 for 4325450	osa-m.8 for 4325450	osa-e.1 for 4325450	zma-u.5 for 100283163	zma-u.5 for 100382239	ath-u.5 for RCY1	gma-u.5 for 100820383	gma-u.5 for 100815690	sly-u.5 for 101252821	vvi-u.5 for 100241975	vvi-u.5 for 104878662	vvi-u.5 for 104880255	ppo-u.5 for 7457885	mtr-u.5 for 11430123	mtr-u.5 for 11420517

Ortholog ID: 7927

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RCY1

Function^*

cyclin-L1-1-like

uncharacterized LOC543040

cyclin-L1-1

uncharacterized LOC100283163

uncharacterized LOC100382239

cyclin-L1-1

arginine-rich cyclin 1

cyclin-L1-1

cyclin-L1-1-like

cyclin-L1-1

cyclin-L1-1-like

cyclin-L1-1

cyclin-L1-1-like

cyclin-L1-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi03060	Protein export	2
bdi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03250	Viral life cycle - HIV-1	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi03020	RNA polymerase	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi03020	RNA polymerase	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta03040	Spliceosome	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta03250	Viral life cycle - HIV-1	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

4325450

543040

123401952

100830239

100283163

100382239

110434873

817183

100815690

100820383

101252821

103829119

100241975

104878662

7457885

11420517

11430123

107930652

107922601

106358071

106430649

102586704

102614657

107785812

107766887

5726593

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4325450 (osa-u.5 coexpression data)

Top 50 enrichment test to 4325450 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	2	1	3	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4325450 (osa-u.5 coexpression data)

Top 50 enrichment test to 4325450 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**