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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5  4328236  large ribosomal subunit protein uL3c 
 osa-r.6  4328236  large ribosomal subunit protein uL3c 
 osa-m.8  4328236  large ribosomal subunit protein uL3c 
 osa-e.1  4328236  large ribosomal subunit protein uL3c 
 tae-r.2  123136179  50S ribosomal protein L3, chloroplastic 
 tae-r.2  123143690  50S ribosomal protein L3, chloroplastic 
 tae-r.2  123132146  50S ribosomal protein L3, chloroplastic 
 hvu-r.1  123403412  50S ribosomal protein L3, chloroplastic 
 bdi-r.1  100835651  50S ribosomal protein L3, chloroplastic 
 zma-u.5  100193892  50S ribosomal protein L3, chloroplastic-like 
 sbi-r.1  8057538  50S ribosomal protein L3, chloroplastic 
 ath-u.5  AT2G43030  Ribosomal protein L3 family protein 
 gma-u.5  100809897  50S ribosomal protein L3, chloroplastic-like 
 gma-u.5  100802392  50S ribosomal protein L3, chloroplastic 
 sly-u.5  101247532  large ribosomal subunit protein uL3c 
 bra-r.6  103858043  50S ribosomal protein L3-1, chloroplastic 
 vvi-u.5  100267754  large ribosomal subunit protein uL3c 
 ppo-u.5  7493861  50S ribosomal protein L3, chloroplastic 
 mtr-u.5  11419287  50S ribosomal protein L3, chloroplastic 
 ghi-r.1  107937726  50S ribosomal protein L3, chloroplastic 
 ghi-r.1  107893116  50S ribosomal protein L3, chloroplastic 
 bna-r.1  106388299  50S ribosomal protein L3-1, chloroplastic 
 bna-r.1  125606861  50S ribosomal protein L3-1, chloroplastic 
 sot-r.1  102592271  50S ribosomal protein L3, chloroplastic 
 cit-r.1  102625471  50S ribosomal protein L3, chloroplastic 
 nta-r.1  107801195  50S ribosomal protein L3, chloroplastic 
 nta-r.1  107825047  large ribosomal subunit protein uL3c-like 
 cre-r.1  CHLRE_01g050316v5  uncharacterized protein 
 cre-r.1  CHLRE_48g761197v5  uncharacterized protein 

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Top 50 coexpressed genes to 4328236 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4328236 (osa-u.5 coexpression data)

CoexMap"4328236"


osaLOC4328236 | Entrez gene ID : 4328236
Species osa tae hvu bdi zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 3 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa03010 [list] [network] Ribosome (386 genes)
GO BP
GO:0006412 [list] [network] translation  (521 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (118 genes)  IEA  
GO:0005840 [list] [network] ribosome  (360 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (352 genes)  IEA  
Protein XP_015625363.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  cyto 2  (predict for XP_015625363.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_015625363.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

osa-u.5
for
4328236


osa-r.6
for
4328236


osa-m.8
for
4328236


osa-e.1
for
4328236


tae-r.2
for
123136179


tae-r.2
for
123143690


tae-r.2
for
123132146


hvu-r.1
for
123403412


bdi-r.1
for
100835651


zma-u.5
for
100193892


sbi-r.1
for
8057538


ath-u.5
for
AT2G43030


gma-u.5
for
100809897


gma-u.5
for
100802392


sly-u.5
for
101247532


bra-r.6
for
103858043


vvi-u.5
for
100267754


ppo-u.5
for
7493861


mtr-u.5
for
11419287


ghi-r.1
for
107937726


ghi-r.1
for
107893116


bna-r.1
for
106388299


bna-r.1
for
125606861


sot-r.1
for
102592271


cit-r.1
for
102625471


nta-r.1
for
107801195


nta-r.1
for
107825047


cre-r.1
for
CHLRE_01g050316v5


cre-r.1
for
CHLRE_48g761197v5



Ortholog ID: 9435
Species osa tae tae tae hvu bdi zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre cre
Symbol LOC4328236 LOC123136179 LOC123143690 LOC123132146 LOC123403412 LOC100835651 LOC100193892 LOC8057538 AT2G43030 LOC100809897 LOC100802392 LOC101247532 LOC103858043 LOC100267754 LOC7493861 LOC11419287 LOC107937726 LOC107893116 LOC106388299 LOC125606861 LOC102592271 LOC102625471 LOC107801195 LOC107825047 CHLRE_01g050316v5 CHLRE_48g761197v5
Function* large ribosomal subunit protein uL3c 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic-like 50S ribosomal protein L3, chloroplastic Ribosomal protein L3 family protein 50S ribosomal protein L3, chloroplastic-like 50S ribosomal protein L3, chloroplastic large ribosomal subunit protein uL3c 50S ribosomal protein L3-1, chloroplastic large ribosomal subunit protein uL3c 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3-1, chloroplastic 50S ribosomal protein L3-1, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic large ribosomal subunit protein uL3c-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi00860 Porphyrin metabolism 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra00860 Porphyrin metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 8
cre00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4328236 123136179 123143690 123132146 123403412 100835651 100193892 8057538 818905 100809897 100802392 101247532 103858043 100267754 7493861 11419287 107937726 107893116 106388299 125606861 102592271 102625471 107801195 107825047 66052160 5726239
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