ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4333939	probable histone H2AXa
osa-r.6	4333939	probable histone H2AXa
osa-m.8	4333939	probable histone H2AXa
osa-e.1	4333939	probable histone H2AXa
osa-u.5	9267462	probable histone H2A.3
osa-u.5	4352398	probable histone H2AXb
osa-u.5	4343518	probable histone H2A.1
zma-u.5	103643930	probable histone H2AXa
zma-u.5	103640970	probable histone H2AXb
zma-u.5	103625929	probable histone H2AXa
ath-u.5	GAMMA-H2AX	gamma histone
ath-u.5	HTA10	histone H2A 10
ath-u.5	H2AXA	Histone superfamily protein
gma-u.5	100787899	histone H2AX
gma-u.5	100810491	probable histone H2A.3
gma-u.5	100816280	probable histone H2A.3
sly-u.5	101256806	probable histone H2AXb
sly-u.5	101264975	histone H2AX-like
sly-u.5	101262690	histone H2A.6
vvi-u.5	100257319	histone H2AX-like
vvi-u.5	100259607	histone H2AX
vvi-u.5	100265822	probable histone H2A.2
ppo-u.5	18109775	histone H2AX
ppo-u.5	18098846	histone H2AX
ppo-u.5	18095880	histone H2A.6
mtr-u.5	11409476	histone H2A.6
mtr-u.5	11434190	histone H2AX
mtr-u.5	11443483	probable histone H2AXb

Top 50 coexpressed genes to 4333939 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4333939 (osa-u.5 coexpression data)

CoexMap"4333939"

[Cytoscape]

Annotation

functional annotation

KEGG

osa03082 [list] [network] ATP-dependent chromatin remodeling (65 genes)

GO BP

GO:0031507 [list] [network] heterochromatin formation

(42 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome	(63 genes)	IEA
GO:0000785 [list] [network] chromatin	(200 genes)	IEA

GO MF

GO:0030527 [list] [network] structural constituent of chromatin	(55 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(94 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1843 genes)	IEA

Protein

NP_001405896.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 2, mito 1, plas 1, mito_plas 1

(predict for NP_001405896.1)

Subcellular
localization
TargetP

mito 3

(predict for NP_001405896.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4333939	osa-r.6 for 4333939	osa-m.8 for 4333939	osa-e.1 for 4333939	osa-u.5 for 9267462	osa-u.5 for 4352398	osa-u.5 for 4343518	zma-u.5 for 103643930	zma-u.5 for 103640970	zma-u.5 for 103625929	ath-u.5 for GAMMA-H2AX	ath-u.5 for HTA10	ath-u.5 for H2AXA	gma-u.5 for 100787899	gma-u.5 for 100810491	gma-u.5 for 100816280	sly-u.5 for 101256806	sly-u.5 for 101264975	sly-u.5 for 101262690	vvi-u.5 for 100257319	vvi-u.5 for 100259607	vvi-u.5 for 100265822	ppo-u.5 for 18109775	ppo-u.5 for 18098846	ppo-u.5 for 18095880	mtr-u.5 for 11409476	mtr-u.5 for 11434190	mtr-u.5 for 11443483

Ortholog

Ortholog ID: 242

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

H2AXA

HTA10

Function^*

probable histone H2A.3

probable histone H2AXa

histone H2A.4-like

probable histone H2AXb

probable histone H2A.2

histone H2A.4

probable histone H2AXa

probable histone H2A.2

uncharacterized LOC100273666

Histone H2A

probable histone H2A.1

probable histone H2A.2

Histone superfamily protein

histone H2A 10

histone H2AX

histone H2AX-like

histone H2A.6

probable histone H2A.1

histone H2AX

histone H2A.6

histone H2AX

probable histone H2AXb

histone H2A.6

probable histone H2AXb

probable histone H2A.1

probable histone H2A.2

probable histone H2AXb

histone H2A.6-like

histone H2AX

histone H2A.6

histone H2AX-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	5
osa03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	4
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	6
bdi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	5
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00240	Pyrimidine metabolism	3
vvi01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	4
ppo03013	Nucleocytoplasmic transport	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	4
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	6
sot00240	Pyrimidine metabolism	3
sot01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03030	DNA replication	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	16

Expression

Expression pattern

Entrez Gene ID^*

9267462

4333939

123044613

123115855

123425798

123425799

100846160

100830394

100273666

100194327

8081715

8081716

837409

841528

106798115

100818215

101264975

101262690

103832842

100259607

100254490

18095880

112323895

11443483

11408670

107899136

107920392

125603080

102592368

102586233

102620423

102618811

107822337

107800855

5716480

5725954

The preparation time of this page was 0.1 [sec].


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	7	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4333939 (osa-u.5 coexpression data)

Top 50 enrichment test to 4333939 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**