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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-r.6   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-m.8   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 osa-e.1   4339896   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 zma-u.5   114574132   uncharacterized LOC114574132 
 ath-u.5   CRR22   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100802087   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 gma-u.5   100801345   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 sly-u.5   101265612   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 vvi-u.5   100262586   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 ppo-u.5   7460274   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 mtr-u.5   25488566   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 mtr-u.5   25488565   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 

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Top 50 coexpressed genes to 4339896 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4339896 (osa-u.5 coexpression data)

CoexMap"4339896"


osaLOC4339896 | Entrez gene ID : 4339896      
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 4 1 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (252 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5729 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (840 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1223 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4590 genes)  IEA  
Protein XP_015643851.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  mito 1,  vacu 1  (predict for XP_015643851.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_015643851.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4339896

.
osa-r.6
for
4339896

.
osa-m.8
for
4339896

.
osa-e.1
for
4339896

.
zma-u.5
for
114574132

.
ath-u.5
for
CRR22

.
gma-u.5
for
100802087

.
gma-u.5
for
100801345

.
sly-u.5
for
101265612

.
vvi-u.5
for
100262586

.
ppo-u.5
for
7460274

.
mtr-u.5
for
25488566

.
mtr-u.5
for
25488565

.


Ortholog ID: 10446
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CRR22 LOC100802087 LOC100801345 LOC101265612 LOC4339896 LOC114574132 LOC103842182 LOC100262586 LOC7460274 LOC25488565 LOC25488566 LOC123164958 LOC123148580 LOC123407987 LOC107955338 LOC121230788 LOC106368558 LOC106413393 LOC8079679 LOC102602259 LOC102608598 LOC100832210 LOC107808045 LOC107823769
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic uncharacterized LOC114574132 pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837671 100802087 100801345 101265612 4339896 114574132 103842182 100262586 7460274 25488565 25488566 123164958 123148580 123407987 107955338 121230788 106368558 106413393 8079679 102602259 102608598 100832210 107808045 107823769
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