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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5  4343715  putative pentatricopeptide repeat-containing protein At3g23330 
 osa-r.6  4343715  putative pentatricopeptide repeat-containing protein At3g23330 
 osa-e.1  4343715  putative pentatricopeptide repeat-containing protein At3g23330 
 zma-u.5  100216998  uncharacterized LOC100216998 
 ath-u.5  AT3G23330  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100810402  putative pentatricopeptide repeat-containing protein At3g23330 
 sly-u.5  101254838  putative pentatricopeptide repeat-containing protein At3g23330 
 vvi-u.5  100262037  putative pentatricopeptide repeat-containing protein At3g23330 
 ppo-u.5  18094773  putative pentatricopeptide repeat-containing protein At3g23330 
 mtr-u.5  11406568  putative pentatricopeptide repeat-containing protein At3g23330 

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Top 50 coexpressed genes to 4343715 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4343715 (osa-u.5 coexpression data)

CoexMap"4343715"


osaLOC4343715 | Entrez gene ID : 4343715
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (252 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5729 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (840 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1223 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4590 genes)  IEA  
Protein XP_015644901.1 [sequence] [blastp]
XP_066168313.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_015644901.1)
chlo 6,  mito 4  (predict for XP_066168313.1)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for XP_015644901.1)
chlo 4,  mito 3  (predict for XP_066168313.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

osa-u.5
for
4343715

.

osa-r.6
for
4343715

.

osa-e.1
for
4343715

.

zma-u.5
for
100216998

.

ath-u.5
for
AT3G23330

.

gma-u.5
for
100810402

.

sly-u.5
for
101254838

.

vvi-u.5
for
100262037

.

ppo-u.5
for
18094773

.

mtr-u.5
for
11406568

.


Ortholog ID: 11322
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G23330 LOC100810402 LOC101254838 LOC4343715 LOC100216998 LOC103828751 LOC100262037 LOC18094773 LOC11406568 LOC123044129 LOC123187877 LOC123425218 LOC107893115 LOC106357889 LOC106421405 LOC8054272 LOC102584647 LOC102615668 LOC100828742 LOC107810444 LOC107759037
Function* Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 uncharacterized LOC100216998 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330 putative pentatricopeptide repeat-containing protein At3g23330
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821914 100810402 101254838 4343715 100216998 103828751 100262037 18094773 11406568 123044129 123187877 123425218 107893115 106357889 106421405 8054272 102584647 102615668 100828742 107810444 107759037
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