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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4345812   alpha-amylase isozyme 3E-like 
 osa-r.6   4345812   alpha-amylase isozyme 3E-like 
 osa-m.8   4345812   alpha-amylase isozyme 3E-like 
 osa-e.1   4345812   alpha-amylase isozyme 3E-like 
 osa-u.5   4345814   alpha-amylase isozyme 3D-like 
 zma-u.5   100273029   Alpha-amylase 1 
 zma-u.5   100383492   putative alpha-amylase family protein 
 zma-u.5   100283908   alpha-amylase 
 ath-u.5   AMY1   alpha-amylase-like protein 
 gma-u.5   100815664   alpha-amylase-like 
 sly-u.5   101254788   alpha-amylase 
 sly-u.5   101254670   alpha-amylase 
 vvi-u.5   100250317   alpha-amylase 
 vvi-u.5   100245165   alpha-amylase 
 ppo-u.5   18109585   alpha-amylase 
 mtr-u.5   11419190   alpha-amylase 

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Top 50 coexpressed genes to 4345812 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4345812 (osa-u.5 coexpression data)

CoexMap"4345812"


osaLOC4345812 | Entrez gene ID : 4345812      
Species osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 3 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa00500 [list] [network] Starch and sucrose metabolism (175 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (757 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (10 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (338 genes)  IEA  
Protein NP_001390565.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  chlo 3,  extr 1,  chlo_mito 1  (predict for NP_001390565.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001390565.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4345812
osa-r.6
for
4345812
osa-m.8
for
4345812
osa-e.1
for
4345812
osa-u.5
for
4345814
zma-u.5
for
100273029
zma-u.5
for
100383492
zma-u.5
for
100283908
ath-u.5
for
AMY1
gma-u.5
for
100815664
sly-u.5
for
101254788
sly-u.5
for
101254670
vvi-u.5
for
100250317
vvi-u.5
for
100245165
ppo-u.5
for
18109585
mtr-u.5
for
11419190


Ortholog ID: 1322
Species osa osa tae tae bdi bdi zma zma ath gma sly sly bra vvi vvi ppo mtr ghi ghi bna bna sot sot cit nta nta cre cre
Symbol LOC4342055 LOC4330830 LOC123164937 LOC123112201 LOC100835083 LOC100830032 LOC100283908 LOC100383492 AMY1 LOC100815664 LOC101254670 LOC101254788 LOC103871863 LOC100245165 LOC100250317 LOC18109585 LOC11419190 LOC107905564 LOC107916876 LOC111202328 LOC106369186 LOC102582328 LOC102598863 LOC102612446 LOC107783940 LOC107826644 CHLRE_08g385500v5 CHLRE_08g384750v5
Function* alpha-amylase isozyme 2A-like alpha-amylase-like alpha-amylase type A isozyme alpha-amylase isozyme 3A alpha-amylase type A isozyme alpha-amylase type B isozyme alpha-amylase putative alpha-amylase family protein alpha-amylase-like protein alpha-amylase-like alpha-amylase alpha-amylase alpha-amylase 1 alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase 1-like alpha-amylase 1 alpha-amylase-like alpha-amylase alpha-amylase alpha-amylase alpha-amylase-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 7
tae00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
gma00360 Phenylalanine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 5
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00430 Taurine and hypotaurine metabolism 3
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi01200 Carbon metabolism 4
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
ghi00020 Citrate cycle (TCA cycle) 2
ghi00270 Cysteine and methionine metabolism 2
ghi00566 Sulfoquinovose metabolism 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna00500 Starch and sucrose metabolism 2
bna00511 Other glycan degradation 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna00511 Other glycan degradation 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00592 alpha-Linolenic acid metabolism 6
cre00071 Fatty acid degradation 5
cre01212 Fatty acid metabolism 5
cre01040 Biosynthesis of unsaturated fatty acids 4
cre01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 4
cre01200 Carbon metabolism 3
cre01230 Biosynthesis of amino acids 2
cre00030 Pentose phosphate pathway 2
cre00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4342055 4330830 123164937 123112201 100835083 100830032 100283908 100383492 828603 100815664 101254670 101254788 103871863 100245165 100250317 18109585 11419190 107905564 107916876 111202328 106369186 102582328 102598863 102612446 107783940 107826644 5719788 5719803
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