ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4347165	probable polygalacturonase
osa-r.6	4347165	probable polygalacturonase
osa-m.8	4347165	probable polygalacturonase
osa-e.1	4347165	probable polygalacturonase
osa-u.5	4330924	probable polygalacturonase
zma-u.5	103632812	probable polygalacturonase
zma-u.5	100272705	uncharacterized LOC100272705
ath-u.5	AT3G42950	Pectin lyase-like superfamily protein
ath-u.5	AT1G19170	Pectin lyase-like superfamily protein
gma-u.5	100818529	probable polygalacturonase
gma-u.5	100791187	probable polygalacturonase
gma-u.5	100801914	probable polygalacturonase
sly-u.5	101252957	probable polygalacturonase
sly-u.5	101248218	probable polygalacturonase
sly-u.5	101253071	probable polygalacturonase
vvi-u.5	100249126	probable polygalacturonase
ppo-u.5	7490535	probable polygalacturonase
ppo-u.5	18100310	probable polygalacturonase
mtr-u.5	11418613	probable polygalacturonase
mtr-u.5	11441243	probable polygalacturonase

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(757 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(43 genes)

IEA

Protein

XP_015612358.1 [sequence] [blastp]
XP_025876091.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9	(predict for XP_015612358.1)
chlo 9	(predict for XP_025876091.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_015612358.1)
chlo 9	(predict for XP_025876091.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4347165	osa-r.6 for 4347165	osa-m.8 for 4347165	osa-e.1 for 4347165	osa-u.5 for 4330924	zma-u.5 for 103632812	zma-u.5 for 100272705	ath-u.5 for AT3G42950	ath-u.5 for AT1G19170	gma-u.5 for 100818529	gma-u.5 for 100791187	gma-u.5 for 100801914	sly-u.5 for 101252957	sly-u.5 for 101248218	sly-u.5 for 101253071	vvi-u.5 for 100249126	ppo-u.5 for 7490535	ppo-u.5 for 18100310	mtr-u.5 for 11418613	mtr-u.5 for 11441243

Ortholog

Ortholog ID: 3344

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

probable polygalacturonase

uncharacterized LOC100272705

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

putative polygalacturonase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	4
tae01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03060	Protein export	3
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	2
zma00860	Porphyrin metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma00061	Fatty acid biosynthesis	2
gma01212	Fatty acid metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	4
ppo01230	Biosynthesis of amino acids	4
ppo00270	Cysteine and methionine metabolism	4
ppo01200	Carbon metabolism	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	8
ppo00670	One carbon pool by folate	7
ppo01240	Biosynthesis of cofactors	5
ppo00270	Cysteine and methionine metabolism	5
ppo00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	4
bna00240	Pyrimidine metabolism	4
bna01232	Nucleotide metabolism	4
bna00510	N-Glycan biosynthesis	3
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna00510	N-Glycan biosynthesis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	7
nta00270	Cysteine and methionine metabolism	6
nta00450	Selenocompound metabolism	6
nta00670	One carbon pool by folate	3
nta01200	Carbon metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

4347165

4330924

123103759

123145769

123397503

123403436

100835947

100830363

100272705

103632812

8062741

8081943

823351

838500

100818529

100801914

101252957

101253071

103870855

103835862

100249126

18100310

7490535

11441243

11418613

107907090

107958844

106453021

106453061

102592519

102580373

102606758

107789313

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4347165 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347165 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	2	3	3	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4347165 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347165 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**