ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4349591	phosphoglucan phosphatase LSF2, chloroplastic
osa-r.6	4349591	phosphoglucan phosphatase LSF2, chloroplastic
osa-e.1	4349591	phosphoglucan phosphatase LSF2, chloroplastic
osa-u.5	4351304	phosphoglucan phosphatase LSF2, chloroplastic
zma-u.5	732726	uncharacterized LOC732726
ath-u.5	LSF2	dual specificity protein phosphatase (DsPTP1) family protein
gma-u.5	100805592	phosphoglucan phosphatase LSF2, chloroplastic
gma-u.5	100787079	phosphoglucan phosphatase LSF2, chloroplastic
sly-u.5	101259052	phosphoglucan phosphatase LSF2, chloroplastic
vvi-u.5	100251903	phosphoglucan phosphatase LSF2, chloroplastic
ppo-u.5	7453571	phosphoglucan phosphatase LSF2, chloroplastic
mtr-u.5	25489853	phosphoglucan phosphatase LSF2, chloroplastic

functional annotation

KEGG

GO BP

GO:0005983 [list] [network] starch catabolic process	(4 genes)	IEA
GO:0006470 [list] [network] protein dephosphorylation	(123 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(655 genes)

IEA

GO MF

GO:2001070 [list] [network] starch binding	(14 genes)	IEA
GO:0008138 [list] [network] protein tyrosine/serine/threonine phosphatase activity	(22 genes)	IEA
GO:0019203 [list] [network] carbohydrate phosphatase activity	(36 genes)	IEA

Protein

XP_015616821.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_015616821.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_015616821.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4349591	osa-r.6 for 4349591	osa-e.1 for 4349591	osa-u.5 for 4351304	zma-u.5 for 732726	ath-u.5 for LSF2	gma-u.5 for 100805592	gma-u.5 for 100787079	sly-u.5 for 101259052	vvi-u.5 for 100251903	ppo-u.5 for 7453571	mtr-u.5 for 25489853

Ortholog ID: 10755

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

LSF2

Function^*

phosphoglucan phosphatase LSF2, chloroplastic

uncharacterized LOC732726

phosphoglucan phosphatase LSF2, chloroplastic

dual specificity protein phosphatase (DsPTP1) family protein

phosphoglucan phosphatase LSF2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00220	Arginine biosynthesis	2
osa01210	2-Oxocarboxylic acid metabolism	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	4
osa00230	Purine metabolism	4
osa00220	Arginine biosynthesis	3
osa01210	2-Oxocarboxylic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	5
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	5
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00020	Citrate cycle (TCA cycle)	2
bdi00620	Pyruvate metabolism	2
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi01200	Carbon metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	8
zma01240	Biosynthesis of cofactors	6
zma00010	Glycolysis / Gluconeogenesis	4
zma00052	Galactose metabolism	4
zma00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	4
bra04517	IgSF CAM signaling	4
bra04814	Motor proteins	4
bra00620	Pyruvate metabolism	2
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	6
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot04120	Ubiquitin mediated proteolysis	3
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	2
nta00480	Glutathione metabolism	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

4351304

4349591

123103172

123111368

123397925

100840963

732726

8066946

820265

100787079

100805592

101259052

103870419

100251903

7453571

25489853

107904743

106452641

106452723

102605583

102622989

107780579

5720738

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4349591 (osa-u.5 coexpression data)

Top 50 enrichment test to 4349591 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4349591 (osa-u.5 coexpression data)

Top 50 enrichment test to 4349591 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**